Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaagccaaaggcacaccatgtttagtttagactcaaattttgcacttactggtttcactttattgtcag

Basic information

species Zea mays
transcript GRMZM2G104632_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104632_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 5'ss of exon 10
CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaagccaaaggcacaccatgtttagtttagactcaaattttgcacttactggtttcactttattgtcag
| ||||||||||| |||||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||     | |||||     ||| || ||  | |||| |    |||||  || |||| ||| | |   || | ||
CCACCCAGAAGACTGTCGATGGCCCTTCAATGAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCTCCACTGGTGCAGCCAAGgtacgatgaaccaaaaatctaccttgcttt-tctagatttctgttttg-gctgactgttttgattcc-ttattag

upper sequence: GRMZM2G104632_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA16G09020.1 (Glycine max), 5'ss of exon 10
CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctga-agccaaaggcacaccatgtttagtttagactcaaattttgcactt---actggtttcactttattg--tcag--
| || || ||||| || ||||||||||| |||||||||||| |||||||| | || || || ||||| |||||||| || || |||||||| || ||||||   ||  |    |  || |   | |    | ||   |||    | | | ||   | | | ||   |||||    |||   
CAACACAAAAGACTGTAGATGGTCCTTCTATGAAGGATTGGCGAGGAGGAAGAGGGGCAGCTCAAAATATAATTCCAAGTTCAACTGGTGCTGCGAAGgtacaagatggatggacacagattttatgctttctattttcagtactggtatttgtgattaggtttgttttatgaaatcacag

upper sequence: GRMZM2G104632_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA03G22790.1 (Glycine max), 5'ss of exon 10
CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctga-agccaaaggcacaccatgtttagtttagactcaaattttgcactt---actggtttcactttattg--tcag--
| || || |||||||| ||||||||||| |||||||||||| |||||||| | || || || ||||| |||||||| || || |||||||| || ||||||   ||  |    |  || |   | |      ||   |||    | | |  |   | ||| ||   |||||    |||   
CAACACAAAAGACCGTAGATGGTCCTTCTATGAAGGATTGGCGAGGAGGAAGAGGGGCAGCTCAAAATATAATTCCAAGTTCAACTGGTGCTGCGAAGgtacaagatggatggacacagattttatgcttactattttcagtgctggtatatgagattgggtttgttttataaaatcacag

upper sequence: GRMZM2G104632_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 10
CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag--ccaaaggcacaccatgtttagtttagactcaaattttgcacttactggtttcactttattgtcag-----
| || ||||||||||| ||||| ||||| |||||||||||| |||| || || |||||| | ||||| || || || |||||||||||||| |||||||||   || |     ||  ||||      |    |   | | || || | ||     || |||    |  |||  |      
CCACACAGAAGACCGTGGATGGGCCTTCAATGAAGGATTGGCGAGGGGGCCGAGGTGCTTCACAAAATATCATCCCAAGCTCCACTGGTGCTGCAAAGgtatgagatggatttaattcacatggaagtagaatccca-taaagttgtacaaggtgtgattttgactgtttggtatcatag

upper sequence: GRMZM2G104632_T01 (Zea mays), 5'ss of exon 10
lower sequence: PP1S309_84V6.1 (Physcomitrella patens), 5'ss of exon 8
CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaagccaaaggcaca-ccatgtttagtttagactcaaattttgcacttactggtttcactttattgtcag-------------------------------------------------------
| ||||||||||| || || || || ||    ||||| ||| | ||||||||||||||||  || ||||| ||||| ||||| ||||| || |||||||||       | | ||    | || ||   |||  |  |   |   |         |   |   |   |||||| |                                                       
CCACCCAGAAGACTGTGGACGGCCCGTCTGGTAAGGACTGGCGTGGAGGACGTGGTGCTGGACAGAACATCATTCCTAGCTCAACTGGAGCTGCAAAGgtactgtgcacgacagttgaatccttggcgagtgcactcatgaggctgctgtaagttatgtgagcggaattgtctgcactgattcaacattggcctgatcgtcgctttcctcgttcgggattttcaaacag

upper sequence: GRMZM2G104632_T01 (Zea mays), 5'ss of exon 10
lower sequence: PP1S309_73V6.3 (Physcomitrella patens), 5'ss of exon 7
CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaagccaa-aggcacaccatgtttagtttagactcaaattttgcacttactggtttcactttattgtcag---------------------------------------------------
|||||||||||||||| || ||||| ||    ||||| ||| | ||||||||||||||||  || ||||| ||||||||||| ||||| || || |||||| |||    ||  |     ||| || |  | |||||    | |  || |  |  ||  |  | ||   ||| |                                                    
CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGACGTGGTGCTGGACAGAACATTATTCCCAGCTCAACTGGAGCTGCGAAGgta-ctgtgctcattatttggaccctggt--ggttagatgggactgctgtaagttgtgaatggagttgtctgtaaagtctgaacataggcctgatcccaattttcgtgactcgggattttcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211318612|gb|FL124689.1|FL124689
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCATCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|31354565|gb|CD438922.1|CD438922
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|60397796|gb|DN230612.1|DN230612
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|67023119|gb|CO451868.1|CO451868
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTTGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|91869744|gb|EB400518.1|EB400518
EST:     CCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTGGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: CCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|211318619|gb|FL124696.1|FL124696
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|31352951|gb|CD437308.1|CD437308
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|211011830|gb|FL066256.1|FL066256
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGA
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGA
EST: gi|67017162|gb|CO445911.1|CO445911
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|71449916|gb|DR830966.1|DR830966
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGACAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|78543682|gb|DV621180.1|DV621180
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|16925198|gb|BM078266.1|BM078266
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|211011831|gb|FL066257.1|FL066257
EST:     TCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: TCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|6526690|gb|AW215981.1|AW215981
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|149048877|gb|EE048377.2|EE048377
EST:     CCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: CCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|24769367|gb|CA404496.1|CA404496
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|110201672|gb|EC883569.1|EC883569
EST:     AACATAATTCCCAGCCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTCCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: AACATAATTCCCAG-CTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|32945687|gb|CF050506.1|CF050506
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|60347428|gb|DN214401.1|DN214401
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|32857247|gb|CD996928.1|CD996928
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGACC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|16927361|gb|BM080430.1|BM080430
EST:     NACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|71449917|gb|DR830967.1|DR830967
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGACAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|211391098|gb|FL437304.1|FL437304
EST:     CAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: CAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|60355829|gb|DN222802.1|DN222802
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|71320203|gb|DR796854.1|DR796854
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|211318615|gb|FL124692.1|FL124692
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|113703938|gb|EE681442.1|EE681442
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
EST: gi|60396993|gb|DN229812.1|DN229812
EST:     GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAG                         GCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC
genomic: GACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 294

CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTCTCTGTTGTGGATTTGACATGCCGGA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 163

CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTCTCTGTTGTGGATTTGACATGCCGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 152

CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTCTCTGTTGTGGATTTGACATGCCGGA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 269

CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaag ... ttattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTCTCTGTTGTGGATTTGACATGCCGGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACCCAGAAGACCGTCGATGGTCCTTCGATGAAGGATTGGAGAGGAGGACGTGGTGCTGCCCAAAACATAATTCCCAGCTCCACTGGTGCAGCAAAGgtagctgaagccaaaggcacaccatgtttagtttagactcaaattttgcacttactggtttcactttattgtcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG