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...gcaatgccctcatcctcacccctgacggaatggcctacgattcctagcacattgcagcgcccccactgatgcgatttggctgtcatgcttgtacttgtagGTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCCTACATCAGGGCCTCCTCTTCGGC
species | Zea mays |
transcript | GRMZM2G104632_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCGCCGGATCCCGCGTCGCCGCGTCCGACCCCGTCAAG GTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCCEST: gi|15632381|gb|BI679474.1|BI679474
genomic: CGCCGCCGGATCCCGCGTCGCCGCGTCCGACCCCGTCAAGgtacaccctc ... gtacttgtagGTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCC
EST: TCCGCGCCGTCGCCGCCGGATCCCGCGTCGCCGCGTCCGACCCCGTCAAG GTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCCEST: gi|32799643|gb|CD951879.1|CD951879
genomic: TCCGCGCCGTCGCCGCCGGATCCCGCGTCGCCGCGTCCGACCCCGTCAAGgtacaccctc ... gtacttgtagGTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCC
EST: GATCCCGCGTCGCCGCGTCCGACCCCGTCAAG GTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCCEST: gi|32796951|gb|CD949187.1|CD949187
genomic: GATCCCGCGTCGCCGCGTCCGACCCCGTCAAGgtacaccctc ... gtacttgtagGTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCC
EST: GATCCCGCGTCGCCGCGTCCGACCCCGTCAAG GTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCC
genomic: GATCCCGCGTCGCCGCGTCCGACCCCGTCAAGgtacaccctc ... gtacttgtagGTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCC
agcacattgcagcgcccccactgatgcgatttggctgtcatgcttgtacttgtagGTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCCTACATCAGGGCCTCCTCTTCGGC
cactgat putative branch site (score: 112)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaatgccctcatcctcacccctgacggaatggcctacgattcctagcacattgcagcgcccccactgatgcgatttggctgtcatgcttgtacttgtagGTCTCGTGCGTGAGGAGCACTGGCTCAGCTCACTTCGGCTGCGCCTTCCCCTACATCAGGGCCTCCTCTTCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
gcaatgc
- - - - - catcctc
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcatgc