Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggagttcgctactttgtttcgttgcgttatttgttgaagggtacaccttccacgctgctaagatcatttgtttgctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCACTGATGTTCGTACTCGTTCCTCCAGTACCAGTAGTAGCCTAGATAAGAG

Basic information

species Zea mays
transcript GRMZM2G104632_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104632_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 3'ss of exon 13
--------gtaggagttcgctac----tttgtttcgttgcgttatttgttgaagggtacaccttccacgctgctaagatcatttgtttgctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCACTGATGTTCGTACTCGTTCCTCCAGTACCAGTAGTAGCCTAGATAAGAG--
         ||    | |  ||      ||   || |    || |||    |  | |  |   |||       |  | ||  || |||| ||   ||||||||| ||  |||||||||| || |||||||||||||| | ||||||||||||||  | ||      ||||||      ||||     ||||  |||    
gtgagtgtctatatttccattaaggggcttaactcttcatctttttttccaattgttctattgtcctaatgattctgttccattctttgttt---cagCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGAT--TTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354565|gb|CD438922.1|CD438922
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|60345701|gb|DN212674.1|DN212674
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|67023119|gb|CO451868.1|CO451868
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|33098323|gb|CF058283.1|CF058283
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACACGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|91869744|gb|EB400518.1|EB400518
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|31352951|gb|CD437308.1|CD437308
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|110490491|gb|EE013222.1|EE013222
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGGTACAG                         CAACCGGGTTCTGGATTTGATCGCTCACATGGTTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|71449916|gb|DR830966.1|DR830966
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCCCATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|78543682|gb|DV621180.1|DV621180
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|16925198|gb|BM078266.1|BM078266
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|211011831|gb|FL066257.1|FL066257
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|21626017|gb|BQ620938.1|BQ620938
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|148991265|gb|EE032734.2|EE032734
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|6526690|gb|AW215981.1|AW215981
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|149048877|gb|EE048377.2|EE048377
EST:     TCTTCCTTCATGAAGCTCGTGTCTGGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCGGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|20803347|gb|BQ294397.1|BQ294397
EST:     CTTCCTTCATGAAGCTCGTGTCTTGGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: CTTCCTTCATGAAGCTCGTGTCTT-GGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|21809652|gb|BQ667970.1|BQ667970
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|37389585|gb|CF632014.1|CF632014
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|211340828|gb|FL479593.1|FL479593
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|110201672|gb|EC883569.1|EC883569
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|60347428|gb|DN214401.1|DN214401
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|6865068|gb|AW360418.1|AW360418
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|67014564|gb|CO443313.1|CO443313
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|32857247|gb|CD996928.1|CD996928
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|16927361|gb|BM080430.1|BM080430
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|71449917|gb|DR830967.1|DR830967
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|211391098|gb|FL437304.1|FL437304
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|60355829|gb|DN222802.1|DN222802
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|113702479|gb|EE679983.1|EE679983
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|21331210|gb|BQ486591.1|BQ486591
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCGCATGGCTCTTGTGAGCGCCGAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|116821354|gb|EC864654.1|EC864654
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|166674890|gb|EG089824.1|EG089824
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTC
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTC
EST: gi|166603837|gb|EG280622.1|EG280622
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTC
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTC
EST: gi|84977555|gb|DW475977.1|DW475977
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|71320203|gb|DR796854.1|DR796854
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|211111379|gb|FK984525.1|FK984525
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|113703938|gb|EE681442.1|EE681442
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|60396993|gb|DN229812.1|DN229812
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCA
EST: gi|113605551|gb|DW773717.1|DW773717
EST:     TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG                         CAACCGGGTTCTGGATCTGATCGCTCAC
genomic: TCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 455

GTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCACTGATGTTCGTACTCGTTCCTCCAGTACCAGTAGTAGCCTAGATAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 259

GTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCACTGATGTTCGTACTCGTTCCTCCAGTACCAGTAGTAGCCTAGATAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 372

GTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCACTGATGTTCGTACTCGTTCCTCCAGTACCAGTAGTAGCCTAGATAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 608

GTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttc ... gctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCACTGATGTTCGTACTCGTTCCTCCAGTACCAGTAGTAGCCTAGATAAGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgttgaagggtacaccttccacgctgctaagatcatttgtttgctttgacagCAACCGGGTTCTGGATCTGATCGCTCACATGGCTCTTGTGAGCGCCAAGCACTGATGTTCGTACTCGTTCCTCCAGTACCAGTAGTAGCCTAGATAAGAG
                                          tttgcttt  CT-rich tract
                                     atttgttt  TA-rich tract