1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatattccttttgctcaatgaatgggtctagctaaccataatgtcgtagcttcttgagcttagcaatatactcacaatttacttttcatgaattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACATGCCCTGAACTTGTAGGGAGGTGTTCAATTGTTCGTGAGCTTCATGTCT
species | Zea mays |
transcript | GRMZM2G100872_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAG GATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACAEST: gi|76923550|gb|DV169542.1|DV169542
genomic: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAGgtacttaagc ... aattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
EST: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAG GATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACAEST: gi|6654212|gb|AW267617.1|AW267617
genomic: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAGgtacttaagc ... aattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
EST: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAG GATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACAEST: gi|101399515|gb|EB821625.1|EB821625
genomic: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAGgtacttaagc ... aattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
EST: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAG GATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACAEST: gi|78121954|gb|DV540338.1|DV540338
genomic: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAGgtacttaagc ... aattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
EST: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAG GATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGGTACAEST: gi|67025678|gb|CO454427.1|CO454427
genomic: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAGgtacttaagc ... aattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
EST: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAG GATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACAEST: gi|211184732|gb|FL162030.1|FL162030
genomic: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAGgtacttaagc ... aattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
EST: GCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAG GATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCTGTAATGTTACAEST: gi|91049794|gb|EB160212.1|EB160212
genomic: GCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAGgtacttaagc ... aattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
EST: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAG GATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACAEST: gi|32864279|gb|CF003961.1|CF003961
genomic: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAGgtacttaagc ... aattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
EST: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAG GATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACAEST: gi|20337000|gb|BQ172630.1|BQ172630
genomic: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAGgtacttaagc ... aattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
EST: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAG GATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
genomic: CTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACACGACAGgtacttaagc ... aattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACA
gtagcttcttgagcttagcaatatactcacaatttacttttcatgaattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACATGCCCTGAACTTGTAGGGAGGTGTTCAATTGTTCGTGAGCTTCATGTCT
tactcac putative branch site (score: 69)
aatttacttttcatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatattccttttgctcaatgaatgggtctagctaaccataatgtcgtagcttcttgagcttagcaatatactcacaatttacttttcatgaattttacagGATATCCTGATCGGCCTGTTGCGCTTGCGTAAATGTGGCCGTAATGTTACATGCCCTGAACTTGTAGGGAGGTGTTCAATTGTTCGTGAGCTTCATGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - ttttgct
- - - - - - - - -atgaatg
- - - - - - - - - - - - - - - -ctaacca
- - - - - - - - - - - - - - - - - - - - - - - -agcttct