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...tatgtttaaagctacagatgtttgtgcactgtgattatttaaactgatttgttgatacacttttggtcgataattttcttgatctacatttacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG
species | Zea mays |
transcript | GRMZM2G100872_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTEST: gi|211469955|gb|FL098251.1|FL098251
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTEST: gi|50328156|gb|CO523282.1|CO523282
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTEST: gi|78112309|gb|DV530703.1|DV530703
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTEST: gi|93283964|gb|EB676228.1|EB676228
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTEST: gi|148941357|gb|EC886266.2|EC886266
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTEST: gi|149001061|gb|EE038313.2|EE038313
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTEST: gi|91049795|gb|EB160213.1|EB160213
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTEST: gi|148940806|gb|EC885631.2|EC885631
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTEST: gi|89253138|gb|DY624924.1|DY624924
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTEST: gi|78119531|gb|DV537915.1|DV537915
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTEST: gi|50330596|gb|CO525722.1|CO525722
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
EST: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAG GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
genomic: CAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcac ... tacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTT
gatttgttgatacacttttggtcgataattttcttgatctacatttacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG
ataattttcttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtttaaagctacagatgtttgtgcactgtgattatttaaactgatttgttgatacacttttggtcgataattttcttgatctacatttacattctagGTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - gctacag
- - - - - - - - - tgtttgt
- - - - - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - - - - - - actgatt
- - - - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttggt