1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaataaaaaatacagtaaaatcactttcacggcctaaaatggatgtccttttattattctaactgtgcatctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGACTATGCTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACAC
species | Zea mays |
transcript | GRMZM2G100872_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAG GATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGACEST: gi|76923550|gb|DV169542.1|DV169542
genomic: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAGgtaaataaaa ... ctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGAC
EST: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAG GATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGACEST: gi|6654212|gb|AW267617.1|AW267617
genomic: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAGgtaaataaaa ... ctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGAC
EST: CTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAG GATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGACEST: gi|101399515|gb|EB821625.1|EB821625
genomic: CTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAGgtaaataaaa ... ctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGAC
EST: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAG GATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGACEST: gi|78121954|gb|DV540338.1|DV540338
genomic: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAGgtaaataaaa ... ctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGAC
EST: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAG GATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGACEST: gi|32864280|gb|CF003962.1|CF003962
genomic: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAGgtaaataaaa ... ctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGAC
EST: ATCTGGGCCTAAAATGTCGAGATGTCAGAACCCGTGAAGCAGGGATTCAG GATATCCATCACAAGATCAGGCCTGATGAAGTAGAACTTGTTAGACGTGACEST: gi|67025678|gb|CO454427.1|CO454427
genomic: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAGgtaaataaaa ... ctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGAC
EST: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAG GATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGACEST: gi|32864279|gb|CF003961.1|CF003961
genomic: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAGgtaaataaaa ... ctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGAC
EST: ATCTGGGCCTAAAATGTCGAGATGTCAGAACCCGTGAAGCAGGGATTCAG GATATCCATCACAAGATCAGGCCTGATGAAGTAGAACTTGTTAGACGTGACEST: gi|20337000|gb|BQ172630.1|BQ172630
genomic: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAGgtaaataaaa ... ctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGAC
EST: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAG GATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGAC
genomic: ATCTGGGCCTAAAATGCCGAGATGTCAGAACCCGTGAAGCAGGGATTCAGgtaaataaaa ... ctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGAC
ttcacggcctaaaatggatgtccttttattattctaactgtgcatctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGACTATGCTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACAC
ttctaac putative branch site (score: 47)
ttttattattctaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataaaaaatacagtaaaatcactttcacggcctaaaatggatgtccttttattattctaactgtgcatctgtatgtagGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTTAGACGTGACTATGCTGCAAATGAGGGCTGGGAGACGTTCCTCTCTTATGAGGATACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT