1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttattgttttttttagtcacataactttgtctgattgctttcattgtttgtttatgattattctagttgttttgattcacccttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGACTTAGAAAGTTTCAGAGAGTTTTTTGAAAGTCCAGCATTCCGGGCTGATG
species | Zea mays |
transcript | GRMZM2G100872_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAG GTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGACEST: gi|78121954|gb|DV540338.1|DV540338
genomic: TGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgttattgttt ... cttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGAC
EST: TGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAG GTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGACEST: gi|32864280|gb|CF003962.1|CF003962
genomic: TGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgttattgttt ... cttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGAC
EST: TGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAG GTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGAC
genomic: TGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgttattgttt ... cttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGAC
gctttcattgtttgtttatgattattctagttgttttgattcacccttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGACTTAGAAAGTTTCAGAGAGTTTTTTGAAAGTCCAGCATTCCGGGCTGATG
ttttgat putative branch site (score: 148)
ttcaccctttt CT-rich tract
tttgtttatgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattgttttttttagtcacataactttgtctgattgctttcattgtttgtttatgattattctagttgttttgattcacccttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGACTTAGAAAGTTTCAGAGAGTTTTTTGAAAGTCCAGCATTCCGGGCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT