1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctggagtccaagacagcactcagctcaattttattgattcttatattcacgacatgctgtattaaattttgaccagcagttggagatgattataatgtacattgcag
species | Zea mays |
transcript | GRMZM2G100872_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTATEST: gi|211469955|gb|FL098251.1|FL098251
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTATEST: gi|50328156|gb|CO523282.1|CO523282
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTATEST: gi|78112309|gb|DV530703.1|DV530703
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTATEST: gi|148941357|gb|EC886266.2|EC886266
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTATEST: gi|149001061|gb|EE038313.2|EE038313
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTATEST: gi|91049795|gb|EB160213.1|EB160213
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTATEST: gi|148940806|gb|EC885631.2|EC885631
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTATEST: gi|89253138|gb|DY624924.1|DY624924
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTATEST: gi|78119531|gb|DV537915.1|DV537915
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTATEST: gi|50330596|gb|CO525722.1|CO525722
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
EST: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAG GTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
genomic: CCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctgg ... tacattgcagGTCGAGTTCATCTTGATGGGTGGGACTTTCATGTCCTTACCAGCTGATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATAATCCATATGTGCAAGCCAGGAGCAGGATAGATCAGCTCAAGAGGTTAGGGCATAGTGTGGATAAGgtttgtctggagtccaagacagcactcagctcaattttattgattcttatattcacgacatgctgtattaaattttgaccagcagttggagatgattataatgtacattgcag
- - - - - - - - - - - GGAGCA
- - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - AAGAGG