Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcgtgccgctgttgtcctctgtgcatgcatggtctgcgccttgcgcagcgttcctcaaatttgggtgtgtaatgtgagctcgacttcatggctgctgcagGGTCTCGAGCATTGAGAGCAGATCGAGCCACCCAATGGCGTCTGTGCTGGTTGATTATGCCCAGTCGAAGTCAGTTGGACCCAAATCTGATAATGTCGCC

Basic information

species Zea mays
transcript GRMZM2G099191_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149103410|gb|EE288800.2|EE288800
EST:     GAGTTCCAGGCGGTTGGCGAGCGCGTCACTACGCCACAGCTCCTTTACTG                         GGTCTCGAGCATTGAGAGCAGATCGAGCCACCCAATGGCGTCTGTGCTGGT
genomic: GAGTTCCAGGCGGTTGGCGAGCGCGTCACTACGCCACAGCTCCTTTACTGgtgagtgcgt ... gctgctgcagGGTCTCGAGCATTGAGAGCAGATCGAGCCACCCAATGGCGTCTGTGCTGGT
EST: gi|148934258|gb|EC878280.2|EC878280
EST:     GAGTTCCAGGCGGTTGGCGAGCGCGTCACTACGCCACAGCTCCTTTACTG                         GGTCTCGAGCATTGAGAGCAGATCGAGCCACCCAATGGCGTCTGTGCTGGT
genomic: GAGTTCCAGGCGGTTGGCGAGCGCGTCACTACGCCACAGCTCCTTTACTGgtgagtgcgt ... gctgctgcagGGTCTCGAGCATTGAGAGCAGATCGAGCCACCCAATGGCGTCTGTGCTGGT
EST: gi|31354681|gb|CD439038.1|CD439038
EST:     GAGTTCCAGGCGGTTGGCGAGCGCGTCACTACGCCACATCTCCTTTACTG                         GGTCTCGAGCATTGAGAGCAGATCGAGCCACCCAATGGCGTCTGTGCTGGT
genomic: GAGTTCCAGGCGGTTGGCGAGCGCGTCACTACGCCACAGCTCCTTTACTGgtgagtgcgt ... gctgctgcagGGTCTCGAGCATTGAGAGCAGATCGAGCCACCCAATGGCGTCTGTGCTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcgttcctcaaatttgggtgtgtaatgtgagctcgacttcatggctgctgcagGGTCTCGAGCATTGAGAGCAGATCGAGCCACCCAATGGCGTCTGTGCTGGTTGATTATGCCCAGTCGAAGTCAGTTGGACCCAAATCTGATAATGTCGCC
         tcaaattt  TA-rich tract