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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGCTGGCGGCGGCGGCCGCCGGCCTGCCGCCGATCGCCCTCAGGAGCTTCGCGGCCGCGCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCgcaggtaaacacaatcccagactgactgactgacacggatggccggccgatggcgtcgtaatcatctgttgctgttgctcatgcaaagcccccgacagat...

Basic information

species Zea mays
transcript GRMZM2G099191_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149103749|gb|EE289155.2|EE289155
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATC                         TTTCCGGGGCGATAGCTCTCAAGGACTACTCCGAGGCTGGGTTCATCGTGT
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCgcaggtaaac ... ctgcttgcagTTTCCGGGGCGATAGCTCTCAAGGACTACTCCGAGGCTGGGTTCATCGTGT
EST: gi|148934257|gb|EC878279.2|EC878279
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|148934257|gb|EC878279.2|EC878279
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|148934257|gb|EC878279.2|EC878279
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|89754996|gb|DY685578.1|DY685578
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|89754996|gb|DY685578.1|DY685578
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|89754996|gb|DY685578.1|DY685578
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|149070628|gb|EE159039.2|EE159039
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|149070628|gb|EE159039.2|EE159039
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|149070628|gb|EE159039.2|EE159039
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|149079488|gb|EE168465.2|EE168465
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|149079488|gb|EE168465.2|EE168465
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|149079488|gb|EE168465.2|EE168465
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|149004834|gb|EE039339.2|EE039339
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|149004834|gb|EE039339.2|EE039339
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca
EST: gi|149004834|gb|EE039339.2|EE039339
EST:     GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCGC                        
genomic: GCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCAT--Cgcaggtaaac ... ctgcttgca

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGCTGGCGGCGGCGGCCGCCGGCCTGCCGCCGATCGCCCTCAGGAGCTTCGCGGCCGCGCGGAGGCTCACCCTCGACGTCAACATACTCATGCTCATCgcaggtaaacacaatcccagactgactgactgacacggatggccggccgatggcgtcgtaatcatctgttgctgttgctcatgcaaagcccccgacagat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccga