1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaaagtaaaacagtaagaaatataacatctcaagtatcatgcaagggaggcgagaaatataacatcatgttgtttcgtttttgacgtttctgattggcagGTTCATGGACCCTCGGAGCATCGAGACGCAGACAAACCCGATCGATCGGTCTATAGCTCTGCTACTTTTCCGCGAGTCATCTGGCGGCCATGTCCATGTG
species | Zea mays |
transcript | GRMZM2G093096_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TACGATGAACAGCAATGGTGGTAGCGAGGACGGAAAGGA-CTGGAGAACGCAGAAACTTCGTGCAAEST: gi|32849606|gb|CD989287.1|CD989287
genomic: GGTGGTAGCGAGGACGGAAAGGAACTGGAGAACGCAGAAACTTCGTGCAAgtatgtttct ... tgattggcagG
EST: GGTGGTAGCGAGCACGGAAAGGAACTGGAGAACGCAGAAACTTCGTGCAA GTTCATGGACCCTCGGAGCATCGAGACGCAGACAAACCCGATCGATCGGTCEST: gi|32943549|gb|CF048368.1|CF048368
genomic: GGTGGTAGCGAGGACGGAAAGGAACTGGAGAACGCAGAAACTTCGTGCAAgtatgtttct ... tgattggcagGTTCATGGACCCTCGGAGCATCGAGACGCAGACAAACCCGATCGATCGGTC
EST: GGTGGTAGCGAGGACGGAAAGGAACTGGAGAACGCAGAAACTTCGTGCAA GTTCATGGACCCTCGGAGCATCGAGACGCAGACAAACCCGATCGATCGGTCEST: gi|6021401|gb|AW066329.1|AW066329
genomic: GGTGGTAGCGAGGACGGAAAGGAACTGGAGAACGCAGAAACTTCGTGCAAgtatgtttct ... tgattggcagGTTCATGGACCCTCGGAGCATCGAGACGCAGACAAACCCGATCGATCGGTC
EST: GGTGGTAGCGAGGACGGAAAGGAACTGGAGAACGCAGAAACTTCGTGCAA GTTCATGGACCCTTGGAGCATCGAGACGCAGACAAACCCGATCGATCGGTC
genomic: GGTGGTAGCGAGGACGGAAAGGAACTGGAGAACGCAGAAACTTCGTGCAAgtatgtttct ... tgattggcagGTTCATGGACCCTCGGAGCATCGAGACGCAGACAAACCCGATCGATCGGTC
ggaggcgagaaatataacatcatgttgtttcgtttttgacgtttctgattggcagGTTCATGGACCCTCGGAGCATCGAGACGCAGACAAACCCGATCGATCGGTCTATAGCTCTGCTACTTTTCCGCGAGTCATCTGGCGGCCATGTCCATGTG
ttctgat putative branch site (score: 3)
cgtttct CT-rich tract
aaatataacatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagtaaaacagtaagaaatataacatctcaagtatcatgcaagggaggcgagaaatataacatcatgttgtttcgtttttgacgtttctgattggcagGTTCATGGACCCTCGGAGCATCGAGACGCAGACAAACCCGATCGATCGGTCTATAGCTCTGCTACTTTTCCGCGAGTCATCTGGCGGCCATGTCCATGTG
- aagtaaaa
- - - - - - - aagaaata
- - - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - -gagaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttg