1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtgtgttgtttatgttctctggaccctcgtttatcttgacattccattcgaattgctattttttcctgctgtaggcctatgactaataatgcttttacagTTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACATAAAGGTGGAGTTGAGGCTTCTGGTGTCATTAGTAGTAAGAAGTTGAAGC
species | Zea mays |
transcript | GRMZM2G093096_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAG TTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACATEST: gi|60399400|gb|DN232214.1|DN232214
genomic: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAGgtaatctcag ... gcttttacagTTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACAT
EST: GGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAG TTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACATEST: gi|211097273|gb|FL268169.1|FL268169
genomic: GGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAGgtaatctcag ... gcttttacagTTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACAT
EST: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAG TTCGAAGGTAAATTCACTGATGAGTTGGCCCACAGCAGTAGCAACGAACATEST: gi|211097275|gb|FL268171.1|FL268171
genomic: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAGgtaatctcag ... gcttttacagTTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACAT
EST: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAG TTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACATEST: gi|211097270|gb|FL268166.1|FL268166
genomic: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAGgtaatctcag ... gcttttacagTTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACAT
EST: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAG TTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACATEST: gi|211099741|gb|FL268172.1|FL268172
genomic: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAGgtaatctcag ... gcttttacagTTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACAT
EST: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAG TTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACATEST: gi|211097272|gb|FL268168.1|FL268168
genomic: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAGgtaatctcag ... gcttttacagTTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACAT
EST: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAG TTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACAT
genomic: TTCGGACCCGGATAGAATTGGTAGGGATGCAAGATTGGAGGGTGCGTGAGgtaatctcag ... gcttttacagTTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACAT
attcgaattgctattttttcctgctgtaggcctatgactaataatgcttttacagTTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACATAAAGGTGGAGTTGAGGCTTCTGGTGTCATTAGTAGTAAGAAGTTGAAGC
gactaat putative branch site (score: 2)
tgctttt putative PPT
aattgctatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttgtttatgttctctggaccctcgtttatcttgacattccattcgaattgctattttttcctgctgtaggcctatgactaataatgcttttacagTTCGAAGGTAAATTCACTGATGAGTTTGCCCACAGCAGTAGCAACGAACATAAAGGTGGAGTTGAGGCTTCTGGTGTCATTAGTAGTAAGAAGTTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- -tgttgtt
- - - - - - - - - ctggacc
- - - - - - - - - - - - - - - - - - - -cattcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtag