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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTAATCTCAGGAACCATCTAGATACAGCGGCGGTACGTGGACTGGACTGGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTGgtaagatccatcctgctcttgagttcctctctccctctctaatcgtttcctgtcgtctttgagctggcccggtgctgttcttgcctcctttgcggggctg...

Basic information

species Zea mays
transcript GRMZM2G093096_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211099742|gb|FL268173.1|FL268173
EST:     GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTG                         TAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
genomic: GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTGgtaagatcca ... taatttgtagTAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
EST: gi|211097273|gb|FL268169.1|FL268169
EST:     GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTG                         TAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
genomic: GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTGgtaagatcca ... taatttgtagTAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
EST: gi|211097275|gb|FL268171.1|FL268171
EST:     GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTG                         TAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
genomic: GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTGgtaagatcca ... taatttgtagTAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
EST: gi|211097270|gb|FL268166.1|FL268166
EST:     GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTG                         TAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
genomic: GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTGgtaagatcca ... taatttgtagTAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
EST: gi|211099741|gb|FL268172.1|FL268172
EST:     GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTG                         TAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
genomic: GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTGgtaagatcca ... taatttgtagTAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
EST: gi|211097272|gb|FL268168.1|FL268168
EST:     GGAGCGAGCAAGCCTGCGCCGGCGCCG-CGTCCTCCCGAAACAGAAGCTG                         TAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT
genomic: GGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTGgtaagatcca ... taatttgtagTAGTTGGTCAAGAACTGGGGATACTGAGTTGAATATGATCTCAAATCCGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTAATCTCAGGAACCATCTAGATACAGCGGCGGTACGTGGACTGGACTGGAGCGAGCAAGCCTGCGCCGGCGCCGCCGTCCTCCCGAAACAGAAGCTGgtaagatccatcctgctcttgagttcctctctccctctctaatcgtttcctgtcgtctttgagctggcccggtgctgttcttgcctcctttgcggggctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctccctc