1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctagtttggttgaaccaaaattcagtttttcatccttgtcttagatgatcaaataaactacgtaccgcagtattaaagttgctttgcatgtctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCACGAAGTGCGCAACATAGACAAGTTTTTCCAAATACGATGAACAGCAATG
species | Zea mays |
transcript | GRMZM2G093096_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGCCCTCTGATAACTCACGTCGAAGAAAGCAGCTTTTCA-CAACTGGCAG-ATGCTGTTAGTCAGEST: gi|67041729|gb|CO467984.1|CO467984
genomic: CA-GTCGAAGAAAGCAGCTTT-CAACAACTG-CAGGATGCTGTTAGTCAGgtatcatggg ... tctacttcagC
EST: TCTATGTCCTCTGATAACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAGEST: gi|32849606|gb|CD989287.1|CD989287
genomic: ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAGgtatcatggg ... tctacttcagC
EST: TGCTGTTAGTCAG CTGGATGTGCAACCCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCAEST: gi|166654720|gb|EG090357.1|EG090357
genomic: TGCTGTTAGTCAGgtatcatggg ... tctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
EST: AAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAG CTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCAEST: gi|6021401|gb|AW066329.1|AW066329
genomic: AAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAGgtatcatggg ... tctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
EST: ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAG CTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
genomic: ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAGgtatcatggg ... tctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
tgatcaaataaactacgtaccgcagtattaaagttgctttgcatgtctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCACGAAGTGCGCAACATAGACAAGTTTTTCCAAATACGATGAACAGCAATG
tctacttc CT-rich tract
aaataaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagtttggttgaaccaaaattcagtttttcatccttgtcttagatgatcaaataaactacgtaccgcagtattaaagttgctttgcatgtctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCACGAAGTGCGCAACATAGACAAGTTTTTCCAAATACGATGAACAGCAATG
- - -ttggttg
- - - - - - aaccaaa
- - - - - - - - - - - - - - ttcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - aaataaa