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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAGGAAGTTTGGGCAGCTTGAACATGCTTACTGGAAAGAATCCCAGTGAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgctgtaaccttaaacaccttatattcttgtgtgcatccgtctttaagtatatcagtgaatgagttgctgtttctctttgtag

Basic information

species Zea mays
transcript GRMZM2G088140_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088140_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g13170.2 (Oryza sativa), 5'ss of exon 7
CCAAAGGAAGTTTGGGCAGCTTGAACATGCTTACTGGAAAGAATCCCAGTGAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgctgtaaccttaaacacc--ttatattcttgtgtgcatccgtctttaagtatatcagtgaatgagttgctgtttctctttgtag
| ||||||||||| || |||||||| ||| |||| || |||||  | | ||||||||||||  |||| || ||||| | |||||||| || ||||||||||| | |    ||| ||||||  || |    | | |||||| |  |      | |   | | || || || || || ||| |||| || | ||
CTAAAGGAAGTTTAGGTAGCTTGAATATGATTACAGGGAAGAACTCTACTGAACATGGTAAAACCTCTGGGGCATCAGCTAATGGAGCCATTTCTCAAAGgtttgtgcattgtcaccttagccaacaacaacaatcttgttt-tagaaacttct---tgtgtcggtaaaagaatttctgcttctatt-gcag

upper sequence: GRMZM2G088140_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 7
---CCAAAGGAAGTTTGGGCAGCTTGAACATGCTTACTGGAAAGAATCCCAGTGAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgctgtaacct--taaacaccttatattcttgtgtgcatccgtctttaagtatatc--agtgaatgagtt-gctgtttctctttgtag-----
   | ||||||||||||||||| ||||| |||||||| || ||||||   | ||||| ||||||  | ||||| ||||| | |||||||||   |||| ||||||    | |||   |  |   | |    |   ||  |||| ||  |  ||  |||    |  |  ||||  ||  || | ||  |   ||||| |     
GATCAAAAGGAAGTTTGGGCAGTTTGAATATGCTTACAGGCAAGAAT---AATGAACTTGGTAAAACATCAGGAGCATCTGCTAATGGAGTGTATTCTAAAAGgtgcgctggctaatatatagcagatgaatatcatagttgtatggttttgtagttagtccttgcctagtgcctggtttaggtgagtgggtttgttgcctct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71442579|gb|DR823629.1|DR823629
EST:     GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAG                         TGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
genomic: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgc ... ctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
EST: gi|91873165|gb|EB403122.1|EB403122
EST:     GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCACAG                         TGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
genomic: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgc ... ctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
EST: gi|60355311|gb|DN222284.1|DN222284
EST:     GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAG                         TGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
genomic: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgc ... ctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
EST: gi|71772545|gb|DR970476.1|DR970476
EST:     GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAG                         TGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
genomic: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgc ... ctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA