1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatttttgctgtaaccttaaacaccttatattcttgtgtgcatccgtctttaagtatatcagtgaatgagttgctgtttctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCACAAT
species | Zea mays |
transcript | GRMZM2G088140_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAG TGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCAEST: gi|91873165|gb|EB403122.1|EB403122
genomic: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgc ... ctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
EST: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCACAG TGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCAEST: gi|60355311|gb|DN222284.1|DN222284
genomic: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgc ... ctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
EST: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAG TGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCAEST: gi|71772545|gb|DR970476.1|DR970476
genomic: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgc ... ctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
EST: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAG TGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
genomic: GAACATGGTAAGTCCTCAGGTGCATCGGGTAATGGAGTCACTTCTCAAAGgtatttttgc ... ctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCA
tgtgtgcatccgtctttaagtatatcagtgaatgagttgctgtttctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCACAAT
ttgctgtttctcttt CT-rich tract
tttaagtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttgctgtaaccttaaacaccttatattcttgtgtgcatccgtctttaagtatatcagtgaatgagttgctgtttctctttgtagTGGCGAAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA