1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagcaaggcatctgcccctcaggttcttgatgcttggcttgtgggcattatctttgaagtgaaaaagattacatgctaaaagtttatccttccctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG
species | Zea mays |
transcript | GRMZM2G088140_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|211355419|gb|FL036287.1|FL036287
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|211353027|gb|FL036283.1|FL036283
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|211353024|gb|FL036280.1|FL036280
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|211353025|gb|FL036281.1|FL036281
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|91056940|gb|EB167358.1|EB167358
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|91873165|gb|EB403122.1|EB403122
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|211353026|gb|FL036282.1|FL036282
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|211355416|gb|FL036284.1|FL036284
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|211355418|gb|FL036286.1|FL036286
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|60355311|gb|DN222284.1|DN222284
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|211353023|gb|FL036279.1|FL036279
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|211355417|gb|FL036285.1|FL036285
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTYYNCTCCEST: gi|71772545|gb|DR970476.1|DR970476
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTA-TCC
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAEST: gi|211353577|gb|FL066645.1|FL066645
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
EST: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAG GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
genomic: TGTTTCTGTGATTCACCATGGGAAGCAGTGGAGCAGATACACCGTCTAAGgtaagcaagg ... cctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCA
ttatctttgaagtgaaaaagattacatgctaaaagtttatccttccctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG
tgctaaa putative branch site (score: 2)
tttatccttccctgt putative PPT
taaaagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaggcatctgcccctcaggttcttgatgcttggcttgtgggcattatctttgaagtgaaaaagattacatgctaaaagtttatccttccctgtaacagGAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC