1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTATTGGGCCAACACAGCAAGCTCTGCTCCTGCAATTCATGGCAAAGCGACGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAGgtttgtcttctttttattctgctttgtatgcactgtgtcctccacctttttcttgcgttatttctgtttgcatttttgtgcacaccatatcatctgtcca...
species | Zea mays |
transcript | GRMZM2G088140_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAG GATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCTEST: gi|60350100|gb|DN217073.1|DN217073
genomic: CGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAGgtttgtcttc ... tgtggttcagGATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCT
EST: CGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAG GATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCTEST: gi|60353486|gb|DN220459.1|DN220459
genomic: CGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAGgtttgtcttc ... tgtggttcagGATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCT
EST: CGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAG GATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCTEST: gi|211496290|gb|FL041702.1|FL041702
genomic: CGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAGgtttgtcttc ... tgtggttcagGATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCT
EST: AACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAG GATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCTEST: gi|71772544|gb|DR970475.1|DR970475
genomic: AACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAGgtttgtcttc ... tgtggttcagGATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCT
EST: CGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAG GATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCTEST: gi|32847056|gb|CD986737.1|CD986737
genomic: CGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAGgtttgtcttc ... tgtggttcagGATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCT
EST: CGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAG GATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCT
genomic: CGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAGgtttgtcttc ... tgtggttcagGATGAACATGAACTCAAAAAGCAAAGAAGAAAGCAGTCCAATAGGGAGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTGGGCCAACACAGCAAGCTCTGCTCCTGCAATTCATGGCAAAGCGACGTCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAGTGGACACAGgtttgtcttctttttattctgctttgtatgcactgtgtcctccacctttttcttgcgttatttctgtttgcatttttgtgcacaccatatcatctgtcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA