1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTAGCTGCTCGAAATGCGATTGAAGCTGgtaagctccctgtttgcactctgaatgttcagatgagcctacaaagaaagaaccaacaaatgtttatctgctttagaccgaactaggatcaatagcacacagagattctttggaatatctgttctgttgaaatgttgggcgactagttctgactcctgaacaatgttaacctgcatgtag
species | Zea mays |
transcript | GRMZM2G087192_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAATGCGATTGAAGCTG GATTTGATGGTGTCGAAATCCATGGAGCTCACGGTTACCTGATTGATCAGTEST: gi|60397054|gb|DN229873.1|DN229873
genomic: GAAATGCGATTGAAGCTGgtaagctccc ... ctgcatgtagGATTTGATGGTGTCGAAATCCATGGAGCTCACGGTTACCTGATTGATCAGT
EST: GGGTAGCTGCTCGAAATGCGATTGAAGCTG GATTTGATGGTGTCGAAATCCATGGAGCTCACGGTTACCTGATTGATCAGTEST: gi|16927662|gb|BM080731.1|BM080731
genomic: GGGTAGCTGCTCGAAATGCGATTGAAGCTGgtaagctccc ... ctgcatgtagGATTTGATGGTGTCGAAATCCATGGAGCTCACGGTTACCTGATTGATCAGT
EST: AATGCGATTGAAGCTG GATTTGATGGTGTCGAAATCCATGGAGCTCACGGTTACCTGATTGATCAGTEST: gi|78113505|gb|DV531896.1|DV531896
genomic: AATGCGATTGAAGCTGgtaagctccc ... ctgcatgtagGATTTGATGGTGTCGAAATCCATGGAGCTCACGGTTACCTGATTGATCAGT
EST: GGTAGCTGCTCGAAATGCGATTGAAGCTG GATTTGATGGTGTCGAAATCCATGGAGCTCACGGTTACCTGATTGATCAGTEST: gi|76017394|gb|DT944564.1|DT944564
genomic: GGTAGCTGCTCGAAATGCGATTGAAGCTGgtaagctccc ... ctgcatgtagGATTTGATGGTGTCGAAATCCATGGAGCTCACGGTTACCTGATTGATCAGT
EST: GGGTAGCTGCTCGAAATGCGATTGAAGCTG GATTTGATGGTGTGGAAATCCATGGAGCTCACGGTTACCTGATTGATCAGT
genomic: GGGTAGCTGCTCGAAATGCGATTGAAGCTGgtaagctccc ... ctgcatgtagGATTTGATGGTGTCGAAATCCATGGAGCTCACGGTTACCTGATTGATCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAGCTGCTCGAAATGCGATTGAAGCTGgtaagctccctgtttgcactctgaatgttcagatgagcctacaaagaaagaaccaacaaatgtttatctgctttagaccgaactaggatcaatagcacacagagattctttggaatatctgttctgttgaaatgttgggcgactagttctgactcctgaacaatgttaacctgcatgtag
- AGCTGC
- - GCTGCT
- - - - - - - - - - TTGAAG
- - - - - - - - - - TGAAGC
- - - - - - - - - - - AAGCTG