1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagatcacatactcaacaaaaccaagtgcagcgaatcttaattcttttcgtgaaagaaggtccattcgatcctgagaatcccttttctctgtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTT
species | Zea mays |
transcript | GRMZM2G087192_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211459461|gb|FL315095.1|FL315095
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211438615|gb|FL361924.1|FL361924
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|78105288|gb|DV523706.1|DV523706
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|211049230|gb|FL320166.1|FL320166
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211372990|gb|FL342986.1|FL342986
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211086396|gb|FL335516.1|FL335516
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211004021|gb|FL317949.1|FL317949
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211538244|gb|FL353979.1|FL353979
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211516970|gb|FL321888.1|FL321888
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACA- GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|91878868|gb|EB408825.1|EB408825
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|78113505|gb|DV531896.1|DV531896
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|211399636|gb|FL347340.1|FL347340
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCA
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
tttcgtgaaagaaggtccattcgatcctgagaatcccttttctctgtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTT
tcccttttctctgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatcacatactcaacaaaaccaagtgcagcgaatcttaattcttttcgtgaaagaaggtccattcgatcctgagaatcccttttctctgtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG