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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaccaagatgtttatgaaagcgctcatactatttctactacagttttttttgtaataaaagtgccattataccaacgactgttaaatgttccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAAGCCTCAAGTGAGAGCCAATG

Basic information

species Zea mays
transcript GRMZM2G087192_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G087192_T02 (Zea mays), 3'ss of exon 3
lower sequence: 13113.m00235 (Oryza sativa), 3'ss of exon 4
--agaccaagatgtttatgaaagcgctcatactatttctactacagttttttttgtaataaaagtgccattataccaacgactgttaaatgttccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAAGCCTCAAGTGAGAGCCAATG----------------------------
       ||| ||| || |||| | ||    |  |||||  |||   ||||| |||  ||      ||||   || |||   |||| ||  |  | ||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |||  ||| |||||||| |                            
tagagtgaagctgtgtaggaaaactcttgctcattttctg-tactcctttttatgtggtatcca-accatgtgacgaacacatgttcaacatcactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAAAACCTGCAGTAAGAGCCAACGGCATAGATGTGGCTACTTTCTCAACTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211046904|gb|FL342230.1|FL342230
EST:     AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: gi|211049230|gb|FL320166.1|FL320166
EST:     AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: gi|211086396|gb|FL335516.1|FL335516
EST:     AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: gi|211538244|gb|FL353979.1|FL353979
EST:     GGGATATTTTTSSTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: GGGATATTTTTC-TGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: gi|91878868|gb|EB408825.1|EB408825
EST:     AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: gi|78113505|gb|DV531896.1|DV531896
EST:     AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgtaataaaagtgccattataccaacgactgttaaatgttccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAAGCCTCAAGTGAGAGCCAATG
     ttgtaataaaa  TA-rich tract