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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAAGTCGAAGCATGGAAGCCGATCGTAGACGGGGTTCACCAGAAAGGAGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttaccacctctaacgcagatcggttctcaaagctataaatttaacggcagtctagtcagcttgcaagagaaaattggattcagagttatccatg...

Basic information

species Zea mays
transcript GRMZM2G087192_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G087192_T02 (Zea mays), 5'ss of exon 3
lower sequence: 13113.m00235 (Oryza sativa), 5'ss of exon 4
GAGCAAGTCGAAGCATGGAAGCCGATCGTAGACGGGGTTCACCAGAAAGGAGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttaccacctctaacgcagatcggttctcaaagctataaatttaacggca-----gtctagtca---gcttgcaagagaaaattggattcagagttatccatg
|||||||| ||||| |||||||| ||||||||||| |||||    |||||||| ||||||||||||||||||||||||||||| |||||||| |||  |||||||||||| |  ||| |   |     |||| | | |||||| | ||| | |        | |||| |   ||  ||| |||||  ||  | |  || ||       
GAGCAAGTGGAAGCGTGGAAGCCAATCGTAGACGGCGTTCATGCCAAAGGAGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACAgtatgtttactatatctgatataagcatgttcccta-gctatataattatctgtgtagacatgtagttatttgcaagcaggagaacctttaaattggattt-------

upper sequence: GRMZM2G087192_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ25413 (Selaginella moellendorffii), 5'ss of exon 3
GAGCAAGTCGAAGCATGGAAGCCGATCGTAGACGGGGTTCACCAGAAAGGAGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttaccacctctaacgcagatcggttctcaaagctataaatttaacggcagtctagtcagcttgcaagagaaaattggattcagagttatccatg
|||||||||||||||||||||||||| ||  | |  |||||  | |||||||   | || ||    ||||||||||| || || ||||| ||  || |  ||  || |      ||| |  |     | |||   |||||  |  ||  |  ||  | |   |||                                   
GAGCAAGTCGAAGCATGGAAGCCGATTGTCCAGGCTGTTCATGACAAAGGAGCTGTTTTCTTTCTACAGATTTGGCATGTGGGAAGAGTTTCTCATACATgtgagtatg---aatctgattc---ctgattcatgaagctcgagcttacatagcgttttg--cag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211046904|gb|FL342230.1|FL342230
EST:     AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: gi|211049230|gb|FL320166.1|FL320166
EST:     AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: gi|211086396|gb|FL335516.1|FL335516
EST:     AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: gi|211538244|gb|FL353979.1|FL353979
EST:     GGGATATTTTTSSTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: GGGATATTTTTC-TGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: gi|91878868|gb|EB408825.1|EB408825
EST:     AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: gi|78113505|gb|DV531896.1|DV531896
EST:     AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA                         CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA