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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgtcgtctgctagaccatcaggctactacggctgcttgagatctgtgtggtcatgctaaatttcatcattcagtagtttagtcgatgtctgaataaagatgtgttttctgtatgcgcacaag

Basic information

species Zea mays
transcript GRMZM2G087192_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G087192_T02 (Zea mays), 5'ss of exon 2
lower sequence: 13113.m00235 (Oryza sativa), 5'ss of exon 3
ATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgtcgtctgctagaccatcaggctactacggctgcttgagatctgtgtggtcatgctaaatttcatcattcagtagtttagtcgatgtctgaataaagatgtgttttctgtatgcgcacaag
|||||||||||||||||||||| |||||||||||||||||  | || |||||||| ||| |||| ||||||||||| ||  | || ||||||||||||||||         || | |||||   | |||||     | ||   ||| || |     | |||| | |||| | |  ||     ||| |  | || | | || |   |  ||||| ||||||||   ||||
ATGTTCCTCAGCCTCATGCCATTCTGTACTATCAGCAGAGAACAACCAAAGGAGGCCTTTTGATTGCTGAGGCCACTGGAATCTCGGACACTGCTCAAGGgt-------ctgtatcctagattgttaggctgt---gactttctgaaatttcatgagccatgttcaattgcct--tttgacggttcaa-caatctttaaagatcaa-atgtttcctgtatgcatgcaag

upper sequence: GRMZM2G087192_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ20558 (Selaginella moellendorffii), 5'ss of exon 2
ATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgtcgtctgctagaccatca-ggctactacggctgcttgagatctgtgtggtcatgctaaatttcatcattcagtagtttagtcgatgtctgaataaagatgtgttttctgtatgcgcacaag
   | || |||||||| |||      |||||    || ||||||||| ||||||| ||||| |||||||||||||| | ||| ||   ||| |     ||||  |         |||  |  | ||  || |   ||  ||  |   |    |                                                                             
CCATACCGCAGCCTCACGCCGCCACATACTACGCTCAAAGGGCGACTCAAGGAGGACTTCTCATCGCTGAGGCCACTGCGGTGTCTCCCACGGGATTTGGgtgag---aaaacgtgcatgttcttcgcggatttgacctcttttctcggatag-----------------------------------------------------------------------------

upper sequence: GRMZM2G087192_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ28624 (Selaginella moellendorffii), 5'ss of exon 2
ATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgtcgtctgctagaccatca-ggctactacggctgcttgagatctgtgtggtcatgctaaatttcatcattcagtagtttagtcgatgtctgaataaagatgtgttttctgtatgcgcacaag
   | || ||||| || |||      |||||    || ||||||||| ||||||| ||||| |||||||||||||| | ||| ||   ||| |     ||||  |         |||  |  | ||  || |   ||  ||  |   |    |                                                                             
CCATACCGCAGCCCCACGCCGCCACATACTACGCTCAAAGGGCGACTCAAGGAGGACTTCTCATCGCTGAGGCCACTGCGGTGTCTCCCACGGGATTTGGgtgag---aaaacgtgcatgttcttcgcggatttgacctcttttctcggatag-----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211046904|gb|FL342230.1|FL342230
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
EST: gi|211459461|gb|FL315095.1|FL315095
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
EST: gi|211438615|gb|FL361924.1|FL361924
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
EST: gi|78105288|gb|DV523706.1|DV523706
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCAT
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCAT
EST: gi|211049230|gb|FL320166.1|FL320166
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
EST: gi|211372990|gb|FL342986.1|FL342986
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
EST: gi|211086396|gb|FL335516.1|FL335516
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
EST: gi|211004021|gb|FL317949.1|FL317949
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
EST: gi|211538244|gb|FL353979.1|FL353979
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
EST: gi|211516970|gb|FL321888.1|FL321888
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCAT
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCAT
EST: gi|91878868|gb|EB408825.1|EB408825
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
EST: gi|78113505|gb|DV531896.1|DV531896
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGGAA
EST: gi|211399636|gb|FL347340.1|FL347340
EST:     GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGG                         GTACAAGGACACTCCTGGCATTTGGACC-ATGAGCAAGTCGAAGCATGG
genomic: GGAGGTCTTCTGATCGCTGAGGCCACGGGGGTTTCAGACACTGCTCAAGGgtacgtctgt ... tgcgcacaagGTACAAGGACACTCCTGGCATTTGGACCCATGAGCAAGTCGAAGCATGG