1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAAgtatttttttcttgtaccacactagatataattcatgaaatctgctcgtgggatagactttactgatatgcttgccactttgtag
species | Zea mays |
transcript | GRMZM2G078033_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGCACCCCCATCTAAA GCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGAEST: gi|19350869|gb|BM895401.1|BM895401
genomic: GGCACCCCCATCTAAAgtattttttt ... cactttgtagGCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGA
EST: CCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAA GCTTGAAGGGCTAGATGATCAGGACTTACAATGGTGTGTCTGCCGGCTTGAEST: gi|67029948|gb|CO458697.1|CO458697
genomic: CCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAAgtattttttt ... cactttgtagGCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGA
EST: CTACAGGC-ATTTCCTATTGTGTTTGAGAGGCACCCCCATCTAAA GCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGAEST: gi|67021466|gb|CO450215.1|CO450215
genomic: CTACAGGCAATTT-CTATTGTGTTTGAGAGGCACCCCCATCTAAAgtattttttt ... cactttgtagGCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGA
EST: CCACTGCTACTGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAA GCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGAEST: gi|149011847|gb|EE042454.2|EE042454
genomic: CCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAAgtattttttt ... cactttgtagGCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGA
EST: CCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAA GCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGAEST: gi|31364427|gb|CD448782.1|CD448782
genomic: CCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAAgtattttttt ... cactttgtagGCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGA
EST: CCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAA GCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGAEST: gi|14190983|gb|BG833213.1|BG833213
genomic: CCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAAgtattttttt ... cactttgtagGCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGA
EST: GGCACCCCCATCTAAA GCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGAEST: gi|67012438|gb|CO441187.1|CO441187
genomic: GGCACCCCCATCTAAAgtattttttt ... cactttgtagGCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGA
EST: CCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAA GCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGA
genomic: CCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAAgtattttttt ... cactttgtagGCTTGAAGGGCTAGATGATCAGGTCTTACAATGGTGTGTCTGCCGGCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAAgtatttttttcttgtaccacactagatataattcatgaaatctgctcgtgggatagactttactgatatgcttgccactttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG