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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

atacgtaccagtagttttaatttaagtagtagtaattgtagtagcaatctcttgtaaactgcgctcgcctttgcgtgttcgtggtccttttgcgctttctcgtccctctttctctcaatctctccttattcttctccttccacGGCGAAGCCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAG

Basic information

species Zea mays
transcript GRMZM2G078033_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211187716|gb|FL304185.1|FL304185
EST:     CCCGCCGCCAGGACGGCCTCCTCGTCTTCGTCTTCTTCCTCTCGATTCCC                         GGCGAAGCCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAG
genomic: CCCGCCGCCAGGACGGCCTCCTCGTCTTCGTCTTCTTCCTCTCGATTCCCatacgtacca ... ctccttccacGGCGAAGCCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcgctttctcgtccctctttctctcaatctctccttattcttctccttccacGGCGAAGCCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAG
              tccctctttctctcaa  CT-rich tract
                                     ttattctt  TA-rich tract