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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttatcagtcacggctttccatctactacaattgattcagttcatgtggcagtactcataatatggtcggcgtgtattattgattaatgtcacaagttcgattccacatgatcagGTGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGATAACTCGTTTGGATGCCCAATTGATATGGGAGCCTCATG

Basic information

species Zea mays
transcript GRMZM2G078033_T03
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19350869|gb|BM895401.1|BM895401
EST:     GCATCTCGGGCGTTGCAGCTGCCCGTGCCCTCTCCAATTCTTCATTTAAG                         GTGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGAT
genomic: GCATCTCGGGCGTTGCAGCTGCCCGTGCCCTCTCCAATTCTTCATTTAAGgtaacttatc ... acatgatcagGTGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGAT
EST: gi|211187716|gb|FL304185.1|FL304185
EST:     GCATCTCGGGCGTTGCAGCTGCCCGTGCCCTCTCCAATTCTTCATTTAAG                         GTGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGAT
genomic: GCATCTCGGGCGTTGCAGCTGCCCGTGCCCTCTCCAATTCTTCATTTAAGgtaacttatc ... acatgatcagGTGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGAT
EST: gi|31359211|gb|CD443568.1|CD443568
EST:     GCATCTCGGGCGTTGCAGCTGCCCGTGCCCTCTCCAATTCTTCATTTAAG                         GGGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGAT
genomic: GCATCTCGGGCGTTGCAGCTGCCCGTGCCCTCTCCAATTCTTCATTTAAGgtaacttatc ... acatgatcagGTGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGAT
EST: gi|149011847|gb|EE042454.2|EE042454
EST:     CTCGGGCGTTGCAGCTGCCCGTGCCCTCTCCAATTCTTCATTTAAG                         GTGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGAT
genomic: CTCGGGCGTTGCAGCTGCCCGTGCCCTCTCCAATTCTTCATTTAAGgtaacttatc ... acatgatcagGTGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatggtcggcgtgtattattgattaatgtcacaagttcgattccacatgatcagGTGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGATAACTCGTTTGGATGCCCAATTGATATGGGAGCCTCATG
                     gattaat  putative branch site (score: 3)
            tgtattattgattaat  TA-rich tract