1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtactacctattattttctcgtacatgtaaaattcttttcccatgttattttgttcttgcacctcactgtgtttgttgatccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG
species | Zea mays |
transcript | GRMZM2G078033_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG CTATGCTCTCTTTGATAAGGATGGTAATCAGGCCCCAAAGGAGACAGTCGAEST: gi|67021466|gb|CO450215.1|CO450215
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGAEST: gi|31359211|gb|CD443568.1|CD443568
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGAEST: gi|149011847|gb|EE042454.2|EE042454
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGAEST: gi|31364427|gb|CD448782.1|CD448782
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
ttttcccatgttattttgttcttgcacctcactgtgtttgttgatccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG
tccctctgc CT-rich tract
atgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacctattattttctcgtacatgtaaaattcttttcccatgttattttgttcttgcacctcactgtgtttgttgatccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA