1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattgaaatttcgttttatctctctgtttttatgatgtttacctctctttttgtgttctgtatgttccggatagaaagggggatttgtttttgtcccgatctgtttattatgagctcgtagatattttgttctcacctggttggctggttccgtatgaatctcgtcctgatctcaaataaataaatgaaaaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCATTGTCATCGGCGGTGGCATCTCGGGCGTTGCAGCTGCCCGTGCCCTCTC
species | Zea mays |
transcript | GRMZM2G078033_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCGAAGCCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAG GCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCAEST: gi|31359211|gb|CD443568.1|CD443568
genomic: GGCGAAGCCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAGgtattgaaat ... aaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
EST: GGCGAAGCCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAG GCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCAEST: gi|32789616|gb|CD941852.1|CD941852
genomic: GGCGAAGCCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAGgtattgaaat ... aaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
EST: GATCCCAATGGCCTCAAAACTGGAG GCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCAEST: gi|32804563|gb|CD956799.1|CD956799
genomic: GATCCCAATGGCCTCAAAACTGGAGgtattgaaat ... aaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
EST: GATCCCAATGGCCTCAAAACTGGAG GCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
genomic: GATCCCAATGGCCTCAAAACTGGAGgtattgaaat ... aaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
ctggttccgtatgaatctcgtcctgatctcaaataaataaatgaaaaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCATTGTCATCGGCGGTGGCATCTCGGGCGTTGCAGCTGCCCGTGCCCTCTC
tcctgat putative branch site (score: 3)
tgatctcaaataaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgaaatttcgttttatctctctgtttttatgatgtttacctctctttttgtgttctgtatgttccggatagaaagggggatttgtttttgtcccgatctgtttattatgagctcgtagatattttgttctcacctggttggctggttccgtatgaatctcgtcctgatctcaaataaataaatgaaaaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCATTGTCATCGGCGGTGGCATCTCGGGCGTTGCAGCTGCCCGTGCCCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC