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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGCTAGGCATGTCTCTCACAATTCCACTGGCGATGGTTGCGGATATGATCATTCACGGCCGTCACTATTCAGCAGTGTATATTCTTTGTTCTGTCCAGgtgcgagtatccaacagtttagtatttttttaaaaaaaactagaattatagaaaaatatctactatatcttacggcagtaaccaatatgaatgctacgtgttcctgttcagcattctagctcactgttgagtacatttgtcattctgtttgaccatgtgagctttgttcctttgcag

Basic information

species Zea mays
transcript GRMZM2G064831_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064831_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g55260.1 (Oryza sativa), 5'ss of exon 7
CACGCTAGGCATGTCTCTCACAATTCCACTGGCGATGGTTGCGGATATGATCATTCACGGCCGTCACTATTCAGCAGTGTATATTCTTTGTTCTGTCCAGgtg-cgagtatccaacagtttagtatttttttaaaaaaaactagaattatagaaaaatatctactatatcttacggcagtaaccaatatgaatgctacgtgttcctgttcagcattctagctcactgttgagtacatttgtcattctgtttgaccatgtgagctttgttcctttgcag
|||  | |||||||| |||||||||||||| || ||||| || |||||||||||||| || ||||  |||||||| || |||||  || |||||||||||||  |   | |||  ||| |||| ||| | ||         |  | ||||  |||      || ||    ||     | ||    | |  ||  | |  | || |||                                                                       
CACCTTGGGCATGTCACTCACAATTCCACTAGCAATGGTGGCTGATATGATCATTCATGGTCGTCGTTATTCAGCGGTCTATATCTTTGGTTCTGTCCAGgtaactgatgtcct-cagcttaggattgtattttt-----tttaagttatgtaaatgctgttattaaccattttacaattaggtgaaagtaaatcaaaat-tttctg-----------------------------------------------------------------------

upper sequence: GRMZM2G064831_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT4G32140.1 (Arabidopsis thaliana), 5'ss of exon 7
CACGCTAGGCATGTCTCTCACAATTCCACTGGCGATGGTTGCGGATATGATCATTCACGGCCGTCACTATTCAGCAGTGTATATTCTTTGTTCTGTCCAGgtgcgagtatccaacagtttagtatttttttaaaaaaaactagaattatagaaaaatatctactatatcttacggcagtaaccaatatgaatgctacgtgttcctgttcagcattctagctcactgttgagtacatttgtcattctgtttgaccatgtgagctttgttcctttgcag
 || || |||||||||||||||||||| || ||||||||||| || ||||| || || || ||||| ||||||||  | || |||||| | |||   |||||      | | || | ||   ||||   | || || |   |||||    ||| ||| | | ||    || | |  | | | || |  |  |  |  |                                                                               
GACACTGGGCATGTCTCTCACAATTCCGCTTGCGATGGTTGCTGACATGATGATCCATGGTCGTCATTATTCAGCCATTTACATTCTTGGCTCTACTCAGgt------aactaaaactt--atattccatcaacaacag--agaat----gaataatttttcctgatgctcaag--aattagcatttggtttattttgcag----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211163803|gb|FL453168.1|FL453168
EST:     TCATTCACGGCCGTCACTATTCAGCAGTGTATATTCTTTGTTCTGTCCAG                         GTATTTTCAGGCTTTGTCATCGCGAGCCTTGCAGATCGGCTTTCACGTTCT
genomic: TCATTCACGGCCGTCACTATTCAGCAGTGTATATTCTTTGTTCTGTCCAGgtgcgagtat ... tcctttgcagGTATTTTCAGGCTTTGTCATCGCGAGCCTTGCAGATCGGCTTTCACGTTCT