Sequence
atgc intronic sequence ATGC exonic sequenceTAGGCATTGAGCCAAAGTTTTCGATGCCTCACTCTGCTAAAGTGGATGAAGTGGTGGTGGCAAATAGCCTAATTGGAAGTGTACTATCAGATTACTTCTGgtatgtgttaaagaaggctgatatctttttatattaccagaccactctattattacttgcatactcggggtaattgtgacaggctgactgtggaacttatggccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G064831_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g55260.1 (Oryza sativa), 5'ss of exon 6
TAGGCATTGAGCCAAAGTTTTCGATGCCTCACTCTGCTAAAGTGGATGAAGTGGTGGTGGCAAATAGCCTAATTGGAAGTGTACTATCAGATTACTTCTGgtatgtgttaaagaaggctgatatcttt-ttatattaccagaccactctattattacttgcatactcggggtaattgtgacaggctgactgtggaacttatggccag
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TAGGCATTGAACCAAAGTTTACAATACCCCACTCAGCCAAAGTGGATGAAGTGGTGTTGGCAAATGGCCTTATTGGAAGTGTATTGTCAGACTACTTCTGgtacgcactgaccaaggataacatttttattatattgttgcctagttgtgctatttttgacat----ggagcttctg-gtcag------------------------
upper sequence: GRMZM2G064831_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA06G07010.1 (Glycine max), 5'ss of exon 6
TAGGCATTGAGCCAAAGTTTTCGATGCCTCACTCTGCTAAAGTGGATGAAGTGGTGGTGGCAAATAGCCTAATTGGAAGTGTACTATCAGATTACTTCTGgtatgtgttaaagaaggctgatatctttttatattaccagaccactctattattacttgcatactcggggtaattgtgacaggctgactgtggaacttatggccag
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TAGGAATTGAACCCAAATTTACCATTCCCCACTCTGCTAAAGTGGATGAAGTGGTTCTTGCAAATGGATTTATTGGAAGCGTACTTTCAGACTACTTCTGgtacatg-----aaaagc------cttatta-attaaaagaat----tgcaattactcaaaatcttcaaaatcttatattatac--gttgttccatctat--ccag
upper sequence: GRMZM2G064831_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA04G06930.2 (Glycine max), 5'ss of exon 4
TAGGCATTGAGCCAAAGTTTTCGATGCCTCACTCTGCTAAAGTGGATGAAGTGGTGGTGGCAAATAGCCTAATTGGAAGTGTACTATCAGATTACTTCTGgtatgtgttaaagaaggctgatatctttttatattaccagaccactctat-tattacttgcatactcggggtaattgtgacaggctgactgtggaacttatggccag
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TAGGAATTGAACCCAAATTTACCATTCCCCACTCTGCTAAAGTGGACGAAGTGGTTCTTGCAAATGGATTTATTGGAAGCGTACTTTCAGACTACTTCTGgtacatg----aaaagccttattaattaaaacaattgca-attactcaaaatcttatctg-atattttgtttcatctatccag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211163803|gb|FL453168.1|FL453168EST: GAAGTGTACTATCAGATTACTTCTG GSCCCTTTCTGTTGTTTGGACTACTCCCTTGGTGGCCACGCTAGGCATGTC
genomic: GAAGTGTACTATCAGATTACTTCTGgtatgtgtta ... ttatggccagGGCCCTTTCTGTTGTTTGGACTACTCCCTTGGTGGCCACGCTAGGCATGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGGCATTGAGCCAAAGTTTTCGATGCCTCACTCTGCTAAAGTGGATGAAGTGGTGGTGGCAAATAGCCTAATTGGAAGTGTACTATCAGATTACTTCTGgtatgtgttaaagaaggctgatatctttttatattaccagaccactctattattacttgcatactcggggtaattgtgacaggctgactgtggaacttatggccag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG