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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgagtatccaacagtttagtatttttttaaaaaaaactagaattatagaaaaatatctactatatcttacggcagtaaccaatatgaatgctacgtgttcctgttcagcattctagctcactgttgagtacatttgtcattctgtttgaccatgtgagctttgttcctttgcagGTATTTTCAGGCTTTGTCATCGCGAGCCTTGCAGATCGGCTTTCACGTTCTCTAGGGCTATTATAGTTTCATAAAACGAAGCAGGTTCTTGTTAGAGTGT

Basic information

species Zea mays
transcript GRMZM2G064831_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064831_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g55260.1 (Oryza sativa), 3'ss of exon 7
gtgcgagtatccaacagtttagtatttttttaaaaaaaactagaattatagaaaaatatctactatatcttacggcagtaaccaatatgaat-gctacgtgttcctgttcagcattctagctcactgttgagtacatttgtcattctgtttgaccatgtgagctttgttcctttgcagGTATTTTCAGGCTTTGTCATCGCGAGCCTTGCAGATCGGCTTTCACGTTCTCTAGGGCTATTATAGTTTCATAAAACGAAGCAGGTTCTTGTTAGAGTGT----
                                                                               || |    ||| | | |   || | || |      |  ||| ||| |  ||  |  | | |||||| || || ||| ||    |||   | |||||||||||||||| || |||||||| || |  ||||| |||||  ||||||||| ||||||||| |   ||| |||  |||  || |||||| || |||||||||    
---------------------------------------------------------------------------tgaaaatctgactgattagttctttgatactttatttgttcttagatcaatcctgcttgaactagtcatt-tgctttaccctgcttacttg--tgctttgcagGTATTTTCTGGGTTTGTCATTGCAAATCTTGCGGATCGCTTTTCACGTTTTCTAGGGCTCT---AGTGTCACGAAATCAACCAGGTT-TTATTAGAGTGTACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211163803|gb|FL453168.1|FL453168
EST:     TCATTCACGGCCGTCACTATTCAGCAGTGTATATTCTTTGTTCTGTCCAG                         GTATTTTCAGGCTTTGTCATCGCGAGCCTTGCAGATCGGCTTTCACGTTCT
genomic: TCATTCACGGCCGTCACTATTCAGCAGTGTATATTCTTTGTTCTGTCCAGgtgcgagtat ... tcctttgcagGTATTTTCAGGCTTTGTCATCGCGAGCCTTGCAGATCGGCTTTCACGTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgttgagtacatttgtcattctgtttgaccatgtgagctttgttcctttgcagGTATTTTCAGGCTTTGTCATCGCGAGCCTTGCAGATCGGCTTTCACGTTCTCTAGGGCTATTATAGTTTCATAAAACGAAGCAGGTTCTTGTTAGAGTGT
                                       ctttgttcctttgc  CT-rich tract
         tacattt  TA-rich tract