Sequence
atgc intronic sequence ATGC exonic sequencegtaggttggtttgctttgctttatttgcagtggagctctatgaattcggcccctaattgtttcgatattgtttcagTGCTGCTTAAAAAATTTTGTGGGGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGTTATCTTGGACTTTTTACCCTTGTTGCTCTCTGGTGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G064831_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g55260.1 (Oryza sativa), 3'ss of exon 4
gtaggttggtttgctttgctttatttgcagtggagctctatgaattcggcccctaattgtttcgatattgtttcagTGCTGCTTAAAAAATTTTGTGGGGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGTTATCTTGGACTTTTTACCCTTGTTGCTCTCTGGTGGAT
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----gttagtt--ctttgcttccttt--agttgatctgtcttgattcaactgctaattgtttcaacattattttagTGCTTCTAAAAAAGTTTGCTGGAGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGCTACCTCGGACTTTTCAGTCTTGTTCTTCTCTGGTGGCT
upper sequence: GRMZM2G064831_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT4G32140.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------------gtaggttggtttgctttgctttatttgcagtggagctctatgaattcggcccctaattgtttcgatattgttt---cagTGCTGCTTAAAAAATTTTGTGGGGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGTTATCTTGGACTTTTTACCCTTGTTGCTCTCTGGTGGAT
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gttagaaatgattaatctttaaaggtttagagtattagtgtgttggggaggataacctcattgat--ggcttgta-cccttctgatattgacaacacagTGCTTCTTAAGAAGTTTGCCGGTGAAGAAGGAGAAGGGGTTGATGTCCAAAAGCTGTTTGGATACATAGGATTATTTACACTTGTTGCTCTCTGGTGGCT
upper sequence: GRMZM2G064831_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv04s0008g06500.t01 (Vitis vinifera), 3'ss of exon 4
gtaggttggtttgctttgctttatttgcag------tggagctctatg-aattcggcccctaattgtttcgatattgtttcagTGCTGCTTAAAAAATTTTGTGGGGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGTTATCTTGGACTTTTTACCCTTGTTGCTCTCTGGTGGAT
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gttggccttatctttaatcttattttgaaaaactatttagattacatataatattctcattcattctacaattaatgttgcagTGCTTCTTAAAAAGTTTGCTGGTGAGGAAGGAGAAAGGGTTGATGTGCAAAAGTTGTTTGGATATATTGGATTATTTACACTGGTAGCACTGTGGTGGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttgcagtggagctctatgaattcggcccctaattgtttcgatattgtttcagTGCTGCTTAAAAAATTTTGTGGGGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGTTATCTTGGACTTTTTACCCTTGTTGCTCTCTGGTGGAT
ccctaat putative branch site (score: 3)
ttgtttc putative PPT
taattgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggttggtttgctttgctttatttgcagtggagctctatgaattcggcccctaattgtttcgatattgtttcagTGCTGCTTAAAAAATTTTGTGGGGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGTTATCTTGGACTTTTTACCCTTGTTGCTCTCTGGTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA