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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttaaagaaggctgatatctttttatattaccagaccactctattattacttgcatactcggggtaattgtgacaggctgactgtggaacttatggccagGGCCCTTTCTGTTGTTTGGACTACTCCCTTGGTGGCCACGCTAGGCATGTCTCTCACAATTCCACTGGCGATGGTTGCGGATATGATCATTCACGGCCGT

Basic information

species Zea mays
transcript GRMZM2G064831_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064831_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os04g55260.1 (Oryza sativa), 3'ss of exon 6
gtatgtgttaaagaaggctgatatctttttatattaccagaccactctattattacttgcatactcggggtaattgtgacaggctgactgtggaacttatggccagGGCCCTTTCTGTTGTTTGGACTACTCCCTTGGTGGCCACGCTAGGCATGTCTCTCACAATTCCACTGGCGATGGTTGCGGATATGATCATTCACGGCCGT
||| |   | |  |||| | | || |||               | | |||| || | |    | | | | || || |||||         |||| ||| ||| |||||| ||||||||||||||||||||||| |||||||||||  | |||||||| |||||||||||||| || ||||| || |||||||||||||| || |||
gtacgcactgaccaaggataacattttt---------------attatattgttgcct----agttgtgctatttttgaca---------tggagcttctggtcagGGCTCTTTCTGTTGTTTGGACTACTCCTTTGGTGGCCACCTTGGGCATGTCACTCACAATTCCACTAGCAATGGTGGCTGATATGATCATTCATGGTCGT

upper sequence: GRMZM2G064831_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT4G32140.1 (Arabidopsis thaliana), 3'ss of exon 6
------------------------------------------------gtatgtgttaaagaaggctg---atatctttttatattaccagacca--ctctattattacttgcata----ctcggggtaattgtgacaggctgactgtggaacttatg--gcca--gGGCCCTTTCTGTTGTTTGGACTACTCCCTTGGTGGCCACGCTAGGCATGTCTCTCACAATTCCACTGGCGATGGTTGCGGATATGATCATTCACGGCCGT
                                                | |  |||| |     |||     | |||| || |||| | || | |    |||| |  |  ||  ||    || |     |   | ||  |     | |||  ||| ||   |||  |||| |||||||| || ||||| |||||  |||| || || || |||||||||||||||||||| || ||||||||||| || ||||| || || || |||
gtatgttttaatgatttcagctattacaagataaagtggacccaacaagca-atgttgagtttagctacaagtgtcttgtt-tattgctaggctagatcctataaagaggtgtgtaattacttgtttagaaaataacttggctgttttggtgcttttgcaaccaaagGGCACTTTCTGTGGTGTGGACAACTCCGCTGGTAGCGACACTGGGCATGTCTCTCACAATTCCGCTTGCGATGGTTGCTGACATGATGATCCATGGTCGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211163803|gb|FL453168.1|FL453168
EST:     GAAGTGTACTATCAGATTACTTCTG                         GSCCCTTTCTGTTGTTTGGACTACTCCCTTGGTGGCCACGCTAGGCATGTC
genomic: GAAGTGTACTATCAGATTACTTCTGgtatgtgtta ... ttatggccagGGCCCTTTCTGTTGTTTGGACTACTCCCTTGGTGGCCACGCTAGGCATGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attacttgcatactcggggtaattgtgacaggctgactgtggaacttatggccagGGCCCTTTCTGTTGTTTGGACTACTCCCTTGGTGGCCACGCTAGGCATGTCTCTCACAATTCCACTGGCGATGGTTGCGGATATGATCATTCACGGCCGT
                              ggctgac  putative branch site (score: 3)
                   taattgt  TA-rich tract