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...actttatctgtatctatgccatataatttttttacgctttgtcttcatcccgttaattttcatataccttttctaatgctaattgctatgctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAACGTTGCTATGCTCTTACTGTGAATTATCCCCTTATGATTGTTGGAACT
species | Zea mays |
transcript | GRMZM2G058498_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|71435207|gb|DR816257.1|DR816257
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|211049997|gb|FL232804.1|FL232804
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGEST: gi|67019316|gb|CO448065.1|CO448065
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAG
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|31355022|gb|CD439379.1|CD439379
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|32915973|gb|CF020785.1|CF020785
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|71427496|gb|DR808546.1|DR808546
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|78092605|gb|DV520979.1|DV520979
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|71765073|gb|DR963010.1|DR963010
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|32868065|gb|CF007747.1|CF007747
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|62550552|gb|DN830972.1|DN830972
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|71310174|gb|DR791376.1|DR791376
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGEST: gi|50339684|gb|CO534810.1|CO534810
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGG-ATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTG
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAEST: gi|67024188|gb|CO452937.1|CO452937
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
EST: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAG GTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
genomic: ATTCCTCAGATGAATCTTCTTGTATCCGGAAGCTGGGATAAGACTTTAAGgtgtgcaagt ... ctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGA
catcccgttaattttcatataccttttctaatgctaattgctatgctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAACGTTGCTATGCTCTTACTGTGAATTATCCCCTTATGATTGTTGGAACT
tgctaat putative branch site (score: 69)
tgctcttt putative PPT
ttaattttcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttatctgtatctatgccatataatttttttacgctttgtcttcatcccgttaattttcatataccttttctaatgctaattgctatgctctttatagGTACTGGGATACAAGGCAATCAAATCCTGTGCATATTCAGCAACTTCCTGAACGTTGCTATGCTCTTACTGTGAATTATCCCCTTATGATTGTTGGAACT
- - - -ctgtatc
- - - - - - - tatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatg