1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTTGCTATGACTGGAGCCGTGGGGCCGAAAATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctgttttcagctttcatgcaaatctgagattcacccctgcaatctttgttgtattatttctggcactgaacctcctcttaatag
species | Zea mays |
transcript | GRMZM2G058498_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|71310172|gb|DR791375.1|DR791375
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|5055819|gb|AI734706.1|AI734706
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|32868064|gb|CF007746.1|CF007746
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|32915972|gb|CF020784.1|CF020784
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|32823928|gb|CD963650.1|CD963650
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|78092604|gb|DV520978.1|DV520978
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCCCAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|24769686|gb|CA404815.1|CA404815
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAACCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|50339683|gb|CO534809.1|CO534809
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|71756690|gb|DR954627.1|DR954627
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|12969344|gb|BG266288.1|BG266288
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCGCAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|211462818|gb|FL454180.1|FL454180
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|78023897|gb|DV492284.1|DV492284
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTGEST: gi|67013709|gb|CO442458.1|CO442458
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
EST: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAG GAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
genomic: ATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctg ... ctcttaatagGAAACCGAGGTCAAAGGAAAGCCGCGCATTGCAACAGGCAGGAAGTGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGCTATGACTGGAGCCGTGGGGCCGAAAATCACAACCCTGCAGCTGCAAAGACATCCATCTATCTCCACAGTCCACAGgtgagttctgttttcagctttcatgcaaatctgagattcacccctgcaatctttgttgtattatttctggcactgaacctcctcttaatag
- - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCAAAG