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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatcttagtgttttctgggatatgttaatatatttgattgggcggtagattgtcttccatgtagtttgtatctggtatcctcattgatttgtttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC

Basic information

species Zea mays
transcript GRMZM2G058498_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g07960.2 (Oryza sativa), 3'ss of exon 4
gtatgatcttagtgttttctgggatatgttaatatatttgattgggcggtagattgtcttccatgtagtttgtatctggtatcctcattgatttgtttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
||||||||| | | |||      | |    | |  |  | || |  | |||  |||  || | |       |||| | || | ||||||||||||||| || | |||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||| || || || ||||||||||||||  |||| ||||||||| |||
gtatgatctcaatatttctctcaagaccacatt-cacataat-gtacagta--ttgattttccta------gtatttagtgtgctcattgatttgttttctatcagGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTC

upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G13780.1 (Glycine max), 3'ss of exon 3
gtatgatcttagtgttttctggga----tatgttaatatatttgattgggcggtagattgtcttccatgtagtttgtatctggtatcctcattgatttgtttcctttt---agGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
        |||||  || ||||||    ||  || | |  |||  ||   |    | |||   || || |  |||  |  |   || | |  || |||||||  || |   ||||| | ||||| ||||||||||| |||||||| || || || ||||| |||||||||||||||||||| |||||||||||| |||| |||||||||||  
-------tttagt--ttactgggaatcgtagattgagaattttcgtttcccat--gtttggtatcaattt--tttaaaaataacattcccgatgttttgttttgttgttgaagGTTTTGTGCTCCGCTTGGAAGGACGATGGAACGACAGTTTTTTCTGGGGGCTGTGACAAGCAGGTCAAGATGTGGCCTCTTATGTCTGGTGGGCAGCCAA

upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA15G05740.1 (Glycine max), 3'ss of exon 3
gtatgatcttagtgttttctgggatat-gttaatatatttgattgggcggtagattgtcttccatgtagtttgtatctggtatcctcattg-atttgtttccttt--tagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
         || ||  ||  | ||| | | | || |   |  |   |    || |   |||  |  |||||| |||||  ||   ||||    | | |||| ||   |||||| | |||||  | |||||||||||||| || ||||| |||||||| || ||||| ||||| || || |||||||||||  | || || || || ||  
--------ctattggatttcgtgatcttgctgatctgcgttgtcctgaaacag-tgaactttta-atagtttttatctcataaattcataatgtatatttctttgcgtagGTTTTGTGCTCTACATGGAAGGATGATGGCACGACTGTATTCTCTGGTGGATGTGATAAGCAAGTGAAGATGTGGCCTCTGTTATCTGGAGGCCAACCAA

upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA01G09290.1 (Glycine max), 3'ss of exon 3
gtatgatcttagtgttttctgggatatgttaatatatttgattgggcggtagattgtcttccatgtagtttgt-atctggtatcctcattgatttgtttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
 || |||     |||    ||||| || |  || ||     || ||    | ||| |     |||   ||    || |  | |  |  ||  |||  ||  ||  ||||| | ||||| |||||||||||||||||||| || || || ||||| |||||||||||||||||||| |||||||| ||    || |||||||||||  
-taggatt----tgtagattggga-atctacatttaccatgtttggtatca-attttaaaaaatgacattcccgatgttttgttttgttttgttttgttgtttgaagGTTTTGTGCTCCGCTTGGAAGGATGATGGAACAACAGTTTTTTCTGGGGGCTGTGACAAGCAGGTCAAGATGTGGCCACTAACATCTGGTGGGCAGCCAA

upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G19260.1 (Glycine max), 3'ss of exon 3
gtatgatcttagtgttttctgggatat-gttaatatatttgattgggcggtagattgtcttccatgtagtttgtatctggtatcctcattgatttgt-ttccttt---tagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
         |  ||  ||  | ||| | |  ||| ||  |  |    |   | | ||   |     |||||| |||    ||   ||||  || | | || ||||   |||||| | |||||  | |||||||||||||| || |||||||||||||| || ||||||||||| || || |||||||||||  | || || || || ||  
---------tgttggatttcgtgatcttgccaatctaccttgt--accaaaacagtgaacttttaatagtttatatgccataaattcataaatgtatatttctttgcatagGTTTTGTGCTCTACATGGAAGGATGATGGCACAACTGTCTTCTCTGGTGGATGTGACAAGCAAGTGAAGATGTGGCCTCTGTTATCTGGAGGCCAACCAA

upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT1G15850.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgatcttagtgttttctgggatatgttaatatatttgattgggcggtagattgtcttccatgtagtttgtatctggtatcctcattgatttgtttcct--tttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
                    |  |||||  | |   ||   |  |    |   |  || | | |    ||||       | |  | |  ||||| | |  |  || ||||| | || || |||||||| ||||||||||| || |||||  | ||||| ||||| |||||||  |||||||||||  |  |||| ||||  || ||  
--------------------gtaatatgcaactgctttc--tgagtttatgtgtcctcctgctttctctttgctcaaattctaatgaaagatttttcttgtggttaagGTTTTGTGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTACCGGAGGATGTGATAAGCAGGCAAAAATGTGGCCATTGTTGTCTGGTGCTCAACCAT

upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv12s0055g00900.t01 (Vitis vinifera), 3'ss of exon 4
gtatgatcttagtgt-tttctgggatatgttaatatat-ttgattgggcggtagattgtcttccatgtagtttgtatctggtatcctcattgatttgtttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
|||  |  ||| | | ||| |   | || |  || | | || |||   |  |   | |   |   |||  |||| || |   ||          || |||   | |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| |  |||| || ||||| ||| 
gtaacaaattattctatttttacaaaatctacatttttatttatttttctttttttggaaatttttgt--tttggattttaaatttggtacatgttatttttgtgtagGTTCTATGCTCTGCTTGGAAGGATGATGGAACAACTGTCTTCTCTGGAGGCTGTGACAAGCAAGTGAAAATGTGGCCTTTGTTGTCTGGCGGGCAACCTA

upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv09s0002g09150.t01 (Vitis vinifera), 3'ss of exon 3
gtatgatcttagtgttttctgggatatgttaatatatttgattgggcggtagattgtcttccatgtagtttgtatctggtatcctcattgatttgtttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
|||  |    |  |||         | ||  |||| |||           | | |   ||   ||| ||| | ||||   |   | |   || |  ||  ||  ||||| | |||||||||||||||||||||||||| | |||||| |||||||||||||||||||| || || ||||||||| | ||||| ||||| || ||  
gtaaaaaaccaaagttg--------aagtccatattttta---------cacactcagttttctgttgtt-gaatctaaaactgtaa--aatctcattttttacagGTTTTGTGCTCGGCTTGGAAGGATGATGGAACAATTGTCTTTTCTGGAGGCTGTGACAAGCAAGTGAAGATGTGGCCTTTGCTGTCTGGTGGTCAACCAG

upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: PP1S33_129V6.1 (Physcomitrella patens), 3'ss of exon 3
---gtatgatcttagtgttttctgggatatgttaatatatttgattgggcggtagattgtcttccatgtagtttgtatctggtatcctcattgatttgtttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
    |||  |||    |||   |   |        |  ||    |     | |  ||  |||  | ||| | ||||   || ||     ||  ||    ||   | |||||  | ||||| || |||||||| ||||||| ||| || ||||| ||||| ||||||||||| |  |||||||||||  | || || ||||| ||| |  
aaaatatcttctcgtagttagttcaaaatcagctctcgatcatttataatgatgaatcatctggc-tgttggttgttgatgata-----atgcatgcactt---tgtagGTCTTATGCTCTGCCTGGAAGGAGGATGGAAGTACAGTGTTCTCAGGAGGTTGTGACAAGCAAGCAAAAATGTGGCCCATACTATCTGGTGGCCAGGCAG

upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ10886 (Selaginella moellendorffii), 3'ss of exon 3
gtatgatcttagtgttttctgggatatgttaa-tatatttgat-tgggcggtagattgtcttccatgtagtttgtatctgg--tatcctcattgatttgtttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
||| |   ||    |  ||    | |    |  || | ||| | |  |   |  |   |     || |  || |     |   ||  ||   |  |   |||  | | ||||  | ||||||||||||||||||||||| || ||||||||||| ||||| || || || |||||||| ||||||||||||   || ||    ||| |  
gtaagtcttttacatgctcgaaaaaaaaggatctagacttgttctaagtttttcaagattggatatttccttggctcgagagctaagctttcttttcgcttttttctcagGTATTGTGCTCGGCTTGGAAGGATGATGGCACGACTGTCTTCTCAGGAGGATGCGATAAACAGGTCAAGATGTGGCCTCTTTCATCCGGAAACCAGTCAG

upper sequence: GRMZM2G058498_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ25923 (Selaginella moellendorffii), 3'ss of exon 3
gtatgatcttagtgttttctgggatatgttaa-tatatttgat-tgggcggt---agattg--tcttccatgtagtttgtatctggtatcctcattgatttgtttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
||| |   ||    |  ||    | |    |  || | ||| | |  |   |   ||||||  | || | |  | |    | ||    |     ||   || ||||   | ||||  | ||||||||||||||||||||||| || ||||||||||| ||||| || || || |||||||| ||||||||||||   || ||    ||| |  
gtaagtcttttacatgctcgaaaaaaaaggatctagacttgttctaagtttttcaagattggatttttccttgactcgagagctaagctttcttttcgcttttttc---tcagGTATTGTGCTCGGCTTGGAAGGATGATGGCACGACTGTCTTCTCAGGAGGATGCGATAAACAGGTCAAGATGTGGCCTCTTTCATCCGGAAATCAGTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37418983|gb|CF647165.1|CF647165
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211052947|gb|FL232812.1|FL232812
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|71319015|gb|DR796255.1|DR796255
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211049994|gb|FL232801.1|FL232801
EST:     GTTGGTGGTAACAG-CAAGCCAAAGGCGTCCATTTCTCATGGATCAGCCG                         GTTCTCTGCTCGGNTTGGAAGGATGATGGAACTACTGTCTT
genomic: GTTGGTGGTAACAGTCA-GCCAAAGGCGTCCATTTCTCATG-ATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTT
EST: gi|71435207|gb|DR816257.1|DR816257
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211049997|gb|FL232804.1|FL232804
EST:     TGTTGGTGGTAACAGTCAGCCAAAGS-GTNCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TGTTGGTGGTAACAGTCAGCCAAAGGCGT-CCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211052943|gb|FL232808.1|FL232808
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|67019316|gb|CO448065.1|CO448065
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211052951|gb|FL232816.1|FL232816
EST:     GTTGGTGGTARCAGTCAGCCGAAAGS-GTCCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGG
genomic: GTTGGTGGTAACAGTCAGCC-AAAGGCGTCC-ATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGG-
EST: gi|31355022|gb|CD439379.1|CD439379
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211050000|gb|FL232807.1|FL232807
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|32915973|gb|CF020785.1|CF020785
EST:     TTGTTGGTGGTAACAGTCAGTCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|71427496|gb|DR808546.1|DR808546
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211049999|gb|FL232806.1|FL232806
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211052950|gb|FL232815.1|FL232815
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGSSGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211052945|gb|FL232810.1|FL232810
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGS-GTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|78092605|gb|DV520979.1|DV520979
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211052946|gb|FL232811.1|FL232811
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATCGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211049992|gb|FL232799.1|FL232799
EST:     TGTTGGTGGTAACAGTCAGCCAAAGS-GTNCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TGTTGGTGGTAACAGTCAGCCAAAGGCGT-CCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|71765073|gb|DR963010.1|DR963010
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211049998|gb|FL232805.1|FL232805
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTYTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|32868065|gb|CF007747.1|CF007747
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|62550552|gb|DN830972.1|DN830972
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|71310174|gb|DR791376.1|DR791376
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211049995|gb|FL232802.1|FL232802
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211052953|gb|FL232818.1|FL232818
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|211052952|gb|FL232817.1|FL232817
EST:     TGTTGGTGGTAACAGTCAGCCAAAGGSGTCCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TGTTGGTGGTAACAGTCAGCCAAAGGCGTCC-ATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|50339684|gb|CO534810.1|CO534810
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|33102995|gb|CF062955.1|CF062955
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|32943595|gb|CF048414.1|CF048414
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
EST: gi|67024188|gb|CO452937.1|CO452937
EST:     TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCG                         GTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC
genomic: TTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 97

GTGAGGTGCTGGGAGATTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 95

GTGAGGTGCTGGGAGATTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 102

GTGAGGTGCTGGGAGATTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 45

GTGAGGTGCTGGGAGATTGTTGGTGGTAACAGTCAGCCAAAGGCGTCCATTTCTCATGATCAGCCGgtatgatctt ... ttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtcttccatgtagtttgtatctggtatcctcattgatttgtttccttttagGTTCTCTGCTCGGCTTGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGCTGTGACAAGCAGGTCAAAATGTGGCCTCTTCTGTCAGGTGGGCAGCCTC
                                  cattgat  putative branch site (score: 45)
                                        tttgtttcctttt  CT-rich tract
                                   attgattt  TA-rich tract