1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcgttcagtccgcttctgcatgatatgtattatactccccactaatttcgatcttttgttatctgctgtacatccatgtcctatgctggatctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGAACAAGTCATTCGAG
species | Zea mays |
transcript | GRMZM2G058498_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211052947|gb|FL232812.1|FL232812
genomic: CGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|71319015|gb|DR796255.1|DR796255
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: GTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211049994|gb|FL232801.1|FL232801
genomic: GTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCNCCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGGCTCACCGCGAACCCTAATCCGEST: gi|71435207|gb|DR816257.1|DR816257
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211049997|gb|FL232804.1|FL232804
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211052943|gb|FL232808.1|FL232808
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211052951|gb|FL232816.1|FL232816
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATTAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCEST: gi|31355022|gb|CD439379.1|CD439379
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCA-TAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCC
EST: TTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCCT TCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211050000|gb|FL232807.1|FL232807
genomic: TTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: TTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|32915973|gb|CF020785.1|CF020785
genomic: TTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|71427496|gb|DR808546.1|DR808546
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: GTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211049999|gb|FL232806.1|FL232806
genomic: GTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: TTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTYTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211052950|gb|FL232815.1|FL232815
genomic: TTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211052945|gb|FL232810.1|FL232810
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211052956|gb|FL232821.1|FL232821
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|78092605|gb|DV520979.1|DV520979
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211052946|gb|FL232811.1|FL232811
genomic: CGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGRCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211049992|gb|FL232799.1|FL232799
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: TTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|71765073|gb|DR963010.1|DR963010
genomic: TTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: GTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211049998|gb|FL232805.1|FL232805
genomic: GTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|32868065|gb|CF007747.1|CF007747
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|62550552|gb|DN830972.1|DN830972
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|71310174|gb|DR791376.1|DR791376
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: GTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211049995|gb|FL232802.1|FL232802
genomic: GTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211052953|gb|FL232818.1|FL232818
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211052952|gb|FL232817.1|FL232817
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: TTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|33102995|gb|CF062955.1|CF062955
genomic: TTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|211052949|gb|FL232814.1|FL232814
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: AGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|32943595|gb|CF048414.1|CF048414
genomic: AGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGEST: gi|67024188|gb|CO452937.1|CO452937
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
EST: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAG GCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
genomic: CAGGTGCCAAGTTTTCTTCGCGTCCTTCACCCGCGACGAGCACCCACCAGgtatgcgcac ... tctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCG
tttcgatcttttgttatctgctgtacatccatgtcctatgctggatctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGAACAAGTCATTCGAG
tctgcccc CT-rich tract
ttttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgttcagtccgcttctgcatgatatgtattatactccccactaatttcgatcttttgttatctgctgtacatccatgtcctatgctggatctgccccagGCATAGAGAGAGATGGCAAGTCTAACCGGCCTCACCGCGAACCCTAATCCGAACAAGTCATTCGAG
- - - - - -gcttctg
- - - - - - - - - - - atatgta
- - - - - - - - - - - - - - - - - - -cccacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctg