Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAGCAGTTGTCACATTTGTTGGTGCAACTGATCTTGCTGAAACTCAGCTGTCTCTGAAAGCCATCTGGGATGTGATCCATCCAAAATCAGGATCAAATgtaaggccgactgacctccatttttttggttgtatagcaataagcagaaagtatgacatccagtttattctaaactttattattttgggtgtgtttacag

Basic information

species Zea mays
transcript GRMZM2G057412_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057412_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g33590.2 (Oryza sativa), 5'ss of exon 6
CTTAGCAGTTGTCACATTTGTTGGTGCAACTGATCTTGCTGAAACTCAGCTGTCTCTGAAAGCCATCTGGGATGTGATCCATCCAAAATCAGGATCAAATgtaaggccgactgacctccatttttttggttgtatagcaataagcagaaagtatgacatccagtttattctaaactttattattttgggtg--tgtttacag
|||||| |||||||||||||||||||||||||||||  ||||||| ||||| ||| |||||||||||||||||||||| || || || |||||||| |||||||||  || | ||     || |  || | |  | | |||||    ||| | | | |||   | |  ||| ||||| | | |||||  ||  | |||| ||
CTTAGCTGTTGTCACATTTGTTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTCACCCTAAGTCAGGATCCAATgtaagggtgaataac-----ttgtggtgatggcttggtaataattgcaaaatgttatatctgttgtcatctgaacttaaatcttttgcatggatttttatag