Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataagcagaacttgatatttctgtggaatactgtattttggtataatagtgttaaagcttctctttgtctgtgcag

Basic information

species Zea mays
transcript GRMZM2G057412_T04
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240130|gb|DT648044.1|DT648044
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|93281097|gb|EB673361.1|EB673361
EST:     TGAACTATATGAGGCGGTTTTTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTTTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|149102607|gb|EE287965.2|EE287965
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|33467969|gb|CF245018.1|CF245018
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|76909352|gb|DV163342.1|DV163342
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|211386247|gb|FL227579.1|FL227579
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|74242217|gb|DT650131.1|DT650131
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|60347261|gb|DN214234.1|DN214234
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|89759386|gb|DY688239.1|DY688239
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|86466198|gb|DY232571.1|DY232571
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|211131389|gb|FL432622.1|FL432622
EST:     AACTATATGAGGCGGTTTTTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: AACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|60354297|gb|DN221270.1|DN221270
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|89249172|gb|DY620958.1|DY620958
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATATGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|211131390|gb|FL432623.1|FL432623
EST:     ATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTTTTTGACATCAAAATTGATCGTACTGAA
genomic: ATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataagcagaacttgatatttctgtggaatactgtattttggtataatagtgttaaagcttctctttgtctgtgcag

- - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - -  TGAAGC