1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACTAGGTGCTGGAAGTAGTTCGCACGAAATAATGGATGAGTCACATCCACATCTTTTGAGAGTTCTCCAAACTTGGCCTGACGCACAAAAGATGATCTCTgtatgttgcaattttcacttttttttgtggttctggttctaagcttctagcaaatttatcatctagttaagttaaaccgaatgattgtag
species | Zea mays |
transcript | GRMZM2G057412_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCTTTTGAGAGTTCTCCAAACTTGGCCTGACGCACAAAAGATGATCTCT GCACTTGATTTGCT-AGCAGTTGTCACATTTGTTGGGTGCAACTGATCTTGEST: gi|89759388|gb|DY688240.1|DY688240
genomic: ATCTTTTGAGAGTTCTCCAAACTTGGCCTGACGCACAAAAGATGATCTCTgtatgttgca ... atgattgtagGCACTTGATT-GCTTAGCAGTTGTCACATTTGTTGG-TGCAACTGATCTTG
EST: ATCTTTTGAGAGTTCTCCAAACTTGGCCTGACGCACAAAAGATGATCTCT GCACTTGATTGCTTAGCAGTTGTCACATTTGTTGGTGCAACTGATCTTGCTEST: gi|93281098|gb|EB673362.1|EB673362
genomic: ATCTTTTGAGAGTTCTCCAAACTTGGCCTGACGCACAAAAGATGATCTCTgtatgttgca ... atgattgtagGCACTTGATTGCTTAGCAGTTGTCACATTTGTTGGTGCAACTGATCTTGCT
EST: ATCTTTTGAGAGTTCTCCAAACTTGGCCTGACGCACAAAAGATGATCTCT GCACTTGATTGCTTAGCAGTTGTCACATTTGTTG
genomic: ATCTTTTGAGAGTTCTCCAAACTTGGCCTGACGCACAAAAGATGATCTCTgtatgttgca ... atgattgtagGCACTTGATTGCTTAGCAGTTGTCACATTTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTAGGTGCTGGAAGTAGTTCGCACGAAATAATGGATGAGTCACATCCACATCTTTTGAGAGTTCTCCAAACTTGGCCTGACGCACAAAAGATGATCTCTgtatgttgcaattttcacttttttttgtggttctggttctaagcttctagcaaatttatcatctagttaagttaaaccgaatgattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG