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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaaccttttcatagctattggattgtattgggcacattatattgtatcatttctaagttggttggggaaaaaaaacagtcaccagtaagataggcatcaagacatgggcatagcgacagttctctaaagaatctgtttgcatgcgttcag

Basic information

species Zea mays
transcript GRMZM2G057412_T04
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057412_T04 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g33590.2 (Oryza sativa), 5'ss of exon 11
GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaaccttttcatagctattggattgtattgggcacattatattgtatcatttctaagttggttggggaaaaaaaacagtcaccagtaagataggcatcaagacatgggcatagcgacagttctctaaagaatctgtttgcatgcgttcag
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GACAATGGATTGCTACATGATATCTTTGACATCAAAATGGATAAAACTGAAAACATGTCAACCACTGAAAAGgtaagcttttcatagctttggacttgctttg----cattctgat-tatgttttgtagggtgtt-----atttagagttttgtttggtatgtctgcttggcaatttccggt-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240130|gb|DT648044.1|DT648044
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|93281097|gb|EB673361.1|EB673361
EST:     TTTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCCCCGAAAAG                         AAAATGTTCAGATTTGGAGAAGAGAAAGGAAGAGCTTTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|149102607|gb|EE287965.2|EE287965
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|33467969|gb|CF245018.1|CF245018
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|60336988|gb|DN203961.1|DN203961
EST:     AACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: AACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|76909352|gb|DV163342.1|DV163342
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|211386247|gb|FL227579.1|FL227579
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCCGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|74242217|gb|DT650131.1|DT650131
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCCCCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTTTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|60347261|gb|DN214234.1|DN214234
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|89759386|gb|DY688239.1|DY688239
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCCCCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|86466198|gb|DY232571.1|DY232571
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|211131389|gb|FL432622.1|FL432622
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|60354297|gb|DN221270.1|DN221270
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|89249172|gb|DY620958.1|DY620958
EST:     TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA
EST: gi|211131390|gb|FL432623.1|FL432623
EST:     TTTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG                         AAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTTTGAAGTTGAATAAA
genomic: TCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAGgtaacctttt ... atgcgttcagAAAATGTTCAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGTTGAATAAA