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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTGGGCTGTCTGACCTTCAGTTCGCGCAGGCCACAGAGCATATTAGCTCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcctgggtggtcctattcgtagtctagcaccttgctggttgctatggctgtctgttagtcaggtttgtgccagtagttgattgtttggatgtgc...

Basic information

species Zea mays
transcript GRMZM2G057412_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057412_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g33590.2 (Oryza sativa), 5'ss of exon 2
CCAGTGGGCTGTCTGACCTTCAGTTCGCGCAGGCCACAGAGCATATTAGCTCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcctgggtggtcctattcgtagtctagcacc--ttgctggttgc-tatggctgtctgttagtcaggtttgtgccagtagttgattgtttggatgtgc
| |  | |||||| ||||| ||| ||||||||||||| |||||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||||||||||||| |   |   |  |||  |   | |   |        |||| |  || || |    | | ||  || | | |  |    |   | |    ||| ||    
CGACGGCGCTGTCCGACCTCCAGCTCGCGCAGGCCACCGAGCAAGTTAGCTCGCAGGATTTTGTTCTTGACAAATACATCGACGATCTCTATGAGAAGAGgtggatcattctcttttcccttagctggatcaatgatgtctgctaggagcctaggaacttatatttttccgttgtacgtttttttatcagcagttgaata---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89759048|gb|DY687994.1|DY687994
EST:     TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG                         GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: gi|50339208|gb|CO534334.1|CO534334
EST:     TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG                         GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: gi|74240131|gb|DT648045.1|DT648045
EST:     TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG                         GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: gi|101398967|gb|EB821356.1|EB821356
EST:     TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG                         GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: gi|211098028|gb|FL078453.1|FL078453
EST:     TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG                         GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: gi|89759388|gb|DY688240.1|DY688240
EST:     TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG                         GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: gi|211386246|gb|FL227578.1|FL227578
EST:     TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG                         GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: gi|93281098|gb|EB673362.1|EB673362
EST:     TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG                         GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG