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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacctttaccttccattgtaaaatgaaatggtattttgccaacgttcggcgctagtaattgttgacacagcatatatggtagcaccatttgtcag...

Basic information

species Zea mays
transcript GRMZM2G042818_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240480|gb|DT648394.1|DT648394
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|33942681|gb|CF349281.1|CF349281
EST:     TCCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380227|gb|FL081829.1|FL081829
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|101390789|gb|EB817329.1|EB817329
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|71448792|gb|DR829842.1|DR829842
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|148991517|gb|EE033036.2|EE033036
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380223|gb|FL081825.1|FL081825
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|29544420|gb|CB604800.1|CB604800
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|78109535|gb|DV527951.1|DV527951
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211252500|gb|FL081823.1|FL081823
EST:     TCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTVDGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTC-GTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380230|gb|FL081832.1|FL081832
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380232|gb|FL081834.1|FL081834
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380228|gb|FL081830.1|FL081830
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380226|gb|FL081828.1|FL081828
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGA-CTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211252494|gb|FL081817.1|FL081817
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACC
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACC
EST: gi|211380225|gb|FL081827.1|FL081827
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380234|gb|FL081836.1|FL081836
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|149000045|gb|EE037146.2|EE037146
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|76292518|gb|DV032086.1|DV032086
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|74239820|gb|DT647734.1|DT647734
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|71304196|gb|DR788218.1|DR788218
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|148930999|gb|EC873545.2|EC873545
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|101384069|gb|EB814089.1|EB814089
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211252496|gb|FL081819.1|FL081819
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211252492|gb|FL081815.1|FL081815
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATNAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|71429840|gb|DR810890.1|DR810890
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|22819358|gb|BU499448.1|BU499448
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|93012152|gb|EB637672.1|EB637672
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380236|gb|FL081838.1|FL081838
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|91056953|gb|EB167371.1|EB167371
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211252498|gb|FL081821.1|FL081821
EST:     TTCTAGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGA-CTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380231|gb|FL081833.1|FL081833
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211252499|gb|FL081822.1|FL081822
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380224|gb|FL081826.1|FL081826
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGA-CTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|211380235|gb|FL081837.1|FL081837
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|149089063|gb|EE178226.2|EE178226
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|148959115|gb|EE010592.2|EE010592
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|71448491|gb|DR829541.1|DR829541
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|74238393|gb|DT646307.1|DT646307
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|71447954|gb|DR829004.1|DR829004
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
EST: gi|22472580|gb|BU037060.1|BU037060
EST:     TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG                         GGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA
genomic: TTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 48 (downstream exon)
Score: 63

GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAAGGGAAATCAA


Block sizes: 42 (upstream exon), 48 (downstream exon)
Score: 112

GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAAGGGAAATCAA


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 227

GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAAGGGAAATCAA


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 173

GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacct ... ttttgaatagGGTGCTGGGCGTGCATTTTCTGCTGGTGGGGACCTAAAGATGTTTTATGAAGGGAAATCAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAGgtccgtacctttaccttccattgtaaaatgaaatggtattttgccaacgttcggcgctagtaattgttgacacagcatatatggtagcaccatttgtcag

- - - - - - - - - - - TGGAGA
- - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatgaa