1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttcctctctctttctcatttagtcattttctttatgtatctcaataatatgaatatcgctgccgcctgccgtgctctttttctttaacttctctatctacgatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGTTCCAGCCGTTCAGTCCGGAGCTGGAACTTCAGGTCCCATCTGATGATT
species | Zea mays |
transcript | GRMZM2G042818_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|15053507|gb|BI359052.1|BI359052
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGNCAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|32938089|gb|CF042908.1|CF042908
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|29544823|gb|CB605431.1|CB605431
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|37400624|gb|CF637668.1|CF637668
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGTAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|15057208|gb|BI361180.1|BI361180
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|166513361|gb|EG081639.1|EG081639
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|148959114|gb|EC905254.2|EC905254
genomic: GGGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTTTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|45568357|gb|CK986026.1|CK986026
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|45847153|gb|CN071096.1|CN071096
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|37392700|gb|CF633603.1|CF633603
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACTGTCTGEST: gi|20336949|gb|BQ172579.1|BQ172579
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|45847757|gb|CN071700.1|CN071700
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|33092056|gb|CF052050.1|CF052050
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|32930057|gb|CF034869.1|CF034869
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACEST: gi|71304194|gb|DR788217.1|DR788217
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTAC
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|29544214|gb|CB604594.1|CB604594
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|37383733|gb|CF628896.1|CF628896
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|40303747|gb|CK348134.1|CK348134
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|84970253|gb|DW468603.1|DW468603
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTCCCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|91053743|gb|EB164161.1|EB164161
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTTTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|74239819|gb|DT647733.1|DT647733
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|211149870|gb|FL475634.1|FL475634
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|29131056|gb|CB381760.1|CB381760
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCCTTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCCCTACCCCTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|37379687|gb|CF626591.1|CF626591
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGEST: gi|71762792|gb|DR960729.1|DR960729
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
EST: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAG TGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
genomic: GGCATTAGAGCTCTTAGCATCGATAAAGACAATGCCCCTAAGgttcctctct ... gatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTG
tcgctgccgcctgccgtgctctttttctttaacttctctatctacgatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGTTCCAGCCGTTCAGTCCGGAGCTGGAACTTCAGGTCCCATCTGATGATT
ctttaac putative branch site (score: 351)
tttttctttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctctctctttctcatttagtcattttctttatgtatctcaataatatgaatatcgctgccgcctgccgtgctctttttctttaacttctctatctacgatgccgcagTGGAATCCCACTACCCTTGAGGAGGTGAAGTACGAGGACATCGACCGTCTGTTCCAGCCGTTCAGTCCGGAGCTGGAACTTCAGGTCCCATCTGATGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA