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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCCTCGGGCAGGAGGTCGGGGCCGCGAGGGTGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctccttgccccgtttcctggttcttgaactagaagcttctttgtggttcaattgtgcgcgcgtggtttctgcttgtag

Basic information

species Zea mays
transcript GRMZM2G042818_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042818_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g54860.1 (Oryza sativa), 5'ss of exon 2
GTGGTCCTCGGGCAGGAGGTCGGGGCCGCGAGGGTGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcctt--gccccgt---ttcctggttcttgaactagaagcttct--------ttgtggttcaattgtgcgcgcgtggtttctgcttgtag
||||| ||||||||||||  ||| | |||||||||||| |  |||||||| ||||||||||| |||| ||||||||| ||||||||| |  | |||  ||  |||   ||    | ||||   |  |||||  |          |||  ||   | |  || ||  |||||||| ||| ||
GTGGTGCTCGGGCAGGAGACCGGCGGCGCGAGGGTGGCGATCCTCAACCGGCCGCGCCAGCTGAACGTCATCTCCGATAGAGTGgtgcgatttctttcgcttcgtgcattttccgatcttatgccggaagcagcagctggaagctgtaattggctgggccgtgctcggtttctggttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240480|gb|DT648394.1|DT648394
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|33942681|gb|CF349281.1|CF349281
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTCCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380227|gb|FL081829.1|FL081829
EST:     TGGCCACTCTCAACCGCCCGCGCCA-MWCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|101390789|gb|EB817329.1|EB817329
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|71448792|gb|DR829842.1|DR829842
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|148991517|gb|EE033036.2|EE033036
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380223|gb|FL081825.1|FL081825
EST:     TGGCCACTCTCAACCGCCCGCGCCAS-TCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|29544420|gb|CB604800.1|CB604800
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|78109535|gb|DV527951.1|DV527951
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211252500|gb|FL081823.1|FL081823
EST:     TGGCCACTCTCAACCGCCCGCGCCAS-TCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380230|gb|FL081832.1|FL081832
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380232|gb|FL081834.1|FL081834
EST:     TGGCCACTCTCAACCGCCCGCGCCA-STCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380228|gb|FL081830.1|FL081830
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380226|gb|FL081828.1|FL081828
EST:     TGGCCACTCTCAACCGCCCGCGCCA-CTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211252494|gb|FL081817.1|FL081817
EST:     TGGCCACTCTCAACCGCCCGCGCCAS-TCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380225|gb|FL081827.1|FL081827
EST:     TGGCCACTCTCAACCGCCCGCGCCA-STCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380234|gb|FL081836.1|FL081836
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380229|gb|FL081831.1|FL081831
EST:     TGGCCACTCTCAACCGCCCGMGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|149000045|gb|EE037146.2|EE037146
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|76292518|gb|DV032086.1|DV032086
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|74239820|gb|DT647734.1|DT647734
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|71304196|gb|DR788218.1|DR788218
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|148930999|gb|EC873545.2|EC873545
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|101384069|gb|EB814089.1|EB814089
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211252496|gb|FL081819.1|FL081819
EST:     TGGCCACTCTCAACCGCCCGCKCCA-CTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211252492|gb|FL081815.1|FL081815
EST:     TGGCCACTCTCAACCGCCCGCGCCA-STCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|71429840|gb|DR810890.1|DR810890
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|22819358|gb|BU499448.1|BU499448
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|93012152|gb|EB637672.1|EB637672
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380236|gb|FL081838.1|FL081838
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|91056953|gb|EB167371.1|EB167371
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211252498|gb|FL081821.1|FL081821
EST:     TGGCCACTCTCAACCGCCCGCGCCA-CTCAACGGCATCTCCGACAGAGWG                         GTGTACCTCCTCGCACAGTTTCTAGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380231|gb|FL081833.1|FL081833
EST:     TGGCCACTCTCAACCGCCCGCGCCA-CTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211252499|gb|FL081822.1|FL081822
EST:     TGGCCACTCTCAACCGCCCGCGCCA-STCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380224|gb|FL081826.1|FL081826
EST:     TGGCCACTCTCAACCGCCCGCGCCA-CTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|211380235|gb|FL081837.1|FL081837
EST:     TGGCCACTCTCAACCGCCCGCGCCA-STCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|149089063|gb|EE178226.2|EE178226
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|148959115|gb|EE010592.2|EE010592
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|71448491|gb|DR829541.1|DR829541
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|74238393|gb|DT646307.1|DT646307
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|71447954|gb|DR829004.1|DR829004
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
EST: gi|22472580|gb|BU037060.1|BU037060
EST:     TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTG                         GTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC
genomic: TGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 83

GTGGTCCTCGGGCAGGAGGTCGGGGCCGCGAGGGTGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 279

GTGGTCCTCGGGCAGGAGGTCGGGGCCGCGAGGGTGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 362

GTGGTCCTCGGGCAGGAGGTCGGGGCCGCGAGGGTGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 297

GTGGTCCTCGGGCAGGAGGTCGGGGCCGCGAGGGTGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctcc ... ctgcttgtagGTGTACCTCCTCGCACAGTTTCTGGAGAAATGGGAGAAGGATGAGAACGCCAAATTCGTCATCTTTAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGTCCTCGGGCAGGAGGTCGGGGCCGCGAGGGTGGCCACTCTCAACCGCCCGCGCCAGCTCAACGGCATCTCCGACAGAGTGgtgtggctccttgccccgtttcctggttcttgaactagaagcttctttgtggttcaattgtgcgcgcgtggtttctgcttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA