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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttttgactaatctctgggagttgctcatgtatcaaaatcacattttgtaaaacattgtggcccttggtatgccgtcattattgaacctttatctgcagGAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTAGGATACTGGGATGGCTGGCTGTATTTCACTTCTGGGCAACGAGACAAAG

Basic information

species Zea mays
transcript GRMZM2G030598_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030598_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os04g41020.1 (Oryza sativa), 3'ss of exon 6
-------ctttttgactaatctctgggagttgctcatgtatcaaaatcacattttgtaaaacattgtggcccttggtatgccgtcattattgaacctttatctgcagGAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTAGGATACTGGGATGGCTGGCTGTATTTCACTTCTGGGCAACGAGACAAAG
       ||     |  || || ||| |  ||| | || ||   | | |  |  |     |  ||||   | |||   |||    |  | |  |  ||    | |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
gcaaacactacgaaaggaaactttggaaagtgcac-tgcatgtcagtaatttcctc----agcttgtcaactttgtattgctactaaaact--attttggcatacagGAATGGACTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACTCTGGTAGGATACTGGGATGGCTGGCTGTATTTCACTTCTGGGCAACGAGACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76013568|gb|DT940738.1|DT940738
EST:     AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTG                         GAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTA
genomic: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTGgtatgtattt ... ttatctgcagGAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtaaaacattgtggcccttggtatgccgtcattattgaacctttatctgcagGAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTAGGATACTGGGATGGCTGGCTGTATTTCACTTCTGGGCAACGAGACAAAG
                                          cctttatct  CT-rich tract
                                 attattgaa  TA-rich tract