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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAGATGGCTGAAGCACCTGTGGCCCGTTTGGATGGCGCTGCTATACAGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacctgcctgatatcttccattatcctatatcatcatgctttgtgttccaatatatcttcttttctacacgttttgatatggagcagttatatt...

Basic information

species Zea mays
transcript GRMZM2G030598_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g41020.1 (Oryza sativa), 5'ss of exon 2
GGAGGAGATGGCTGAAGCACCTGTGGCCCGTTTGGATGGCGCTGCTATACAGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgag-aaacctgcctgatatcttccattatcctatatcatcatgctttgtgttccaatatatcttcttttctacacgttttgatatggagcagt-tatatt-----
||||||||||||||||||||||||| | ||||||||||| |||||||| || |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| || | | |||| |||||  |        ||    |||| ||||||| ||   | | |  | |||   | |  | ||| |   || ||   ||||       
GGAGGAGATGGCTGAAGCACCTGTGCCACGTTTGGATGGTGCTGCTATGCAAATTAAGAATCTCTTATATGTGTTTGCTGGATATGGTACCATTAACCATgtgaggaagcttccctgttatctctcgc------atccagtcatactttgtgctctttt-tcttgtatttataaaatctcttgctgaagaacaacatatagcatgca

upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv09s0054g00620.t01 (Vitis vinifera), 5'ss of exon 2
GGAGGAGATGGCTGAAGCACCTGTGGCCCGTTTGGATGGCGCTGCTATACAGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacctgcctgatatcttccattatcctatatcat--catgctttgtgttccaatatatcttcttttctacacgttttgatatggagcagt-tatatt
|||| |||||||    ||||| ||| | ||| | ||||| ||||| ||||||||||||||||| ||||| || |||||||| |||||||||||| |   ||| |||  ||||    |   ||    | ||  | | |  |  |||   |   |||   ||| || |   ||   | |    |  | ||  | ||   || |  
GGAGAAGATGGCACCTGCACCAGTGCCTCGTCTAGATGGTGCTGCAATACAGATTAAGAATCTTTTATACGTGTTTGCTGGATATGGCACCATTGATTTTgtaagac-cctgataaactcctagagtaatttttttttttttcataggtaaagtta-gataaatatatattagaaaatagatgaagatataccaaagtacac-

upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv14s0171g00320.t01 (Vitis vinifera), 5'ss of exon 2
GGAGGAGATGGCTGAAGCACCTGTGGCCCGTTTGGATGGCGCTGCTATACAGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacctgcctgatatcttccattatcctatatcatcatgctttg----tgttccaatatatcttcttttctacacgtt----ttgatatggagcagttatatt--------------------------------------------------------------------------------
|||||| |||     |||||| ||| | ||  | ||||| ||  | |||||||||||||||||| | ||||| |||||||| ||||||||  | ||| ||||||||| | |   | |  |||    |  |  |   |   || ||| |     | |||  || |||| | |||  ||    ||    ||||  |   | | | | |||                                                                                
GGAGGAAATGCAGCCAGCACCGGTGCCTCGCCTTGATGGGGCCTCCATACAGATTAAGAATCTCCTCTATGTGTTTGCTGGATATGGCACACTCAACTATgtgagaatcttttataagctctgaactggttttgattggacaggctctaaccatcttcagatctatcatttttgttatttattgctattgagttaatgaattcacattgtagttgaagaaattttagcaattctaaattttacgggctttaatgttttctgctcatattcatgtttatgtttttatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234079|gb|DT641993.1|DT641993
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
EST: gi|211021181|gb|FK989207.1|FK989207
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCMTGTTGATATATACAATTTCTCGGATAATACATGGGGT
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGT
EST: gi|211021185|gb|FK989211.1|FK989211
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGA
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGA
EST: gi|28873437|gb|CB329427.1|CB329427
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
EST: gi|211021183|gb|FK989209.1|FK989209
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
EST: gi|211021186|gb|FK989212.1|FK989212
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGATAAT
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAAT
EST: gi|149077978|gb|EE166712.2|EE166712
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
EST: gi|15177410|gb|BI398349.1|BI398349
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
EST: gi|211021182|gb|FK989208.1|FK989208
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
EST: gi|148968151|gb|EE019438.2|EE019438
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
EST: gi|50330857|gb|CO525983.1|CO525983
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
EST: gi|148930190|gb|EC872589.2|EC872589
EST:     AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCAT                         GTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA
genomic: AGATTAAGAATCTCTTATATGTATTTGCTGGGTATGGCACCATTAACCATgtgagaaacc ... tttcttttagGTGCATTCTCATGTTGATATATACAATTTCTCGGATAATACATGGGGTGGA