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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actagtagtttcactattttctcagtaaccttcctgtttgcactatttgtttatccttgttattgcccctctttttgaaaattacattctgtttgggcagGTTGTGTATAGTAATGTTTATATGCTTGATGATGGAACGACTTGGAAGGAACTTCCACCTATGCCAAAACCAGATTCACATATAGAATTTGCTTGGGTGA

Basic information

species Zea mays
transcript GRMZM2G030598_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030598_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g41020.1 (Oryza sativa), 3'ss of exon 5
-actagtagtttcactattttctcagtaaccttcctgtttgcactatttgtttatccttgttattgcccctctttttgaaaattacattctgtttgggcagGTTGTGTATAGTAATGTTTATATGCTTGATGATGGAACGACTTGGAAGGAACTTCCACCTATGCCAAAACCAGATTCACATATAGAATTTGCTTGGGTGA
     | | ||| || |  | ||    | |  |  |  |||   | ||    || | ||   |||        |  | |   | |  |||||  |  |||||| || || || ||||| || |||||||||||||||| ||  ||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||
tttgtgaaattttac-acctcctagagacctatgttcattgttttcttgtaataacttttagattttgttctatagtcattttgatcttctgcctatgcagGTGGTCTACAGCAATGTCTACATGCTTGATGATGGAATGAAGTGGAAAGAATTTCCACCTATGCCAAAGCCAGATTCACATATAGAGTTTGCTTGGGTGA

upper sequence: GRMZM2G030598_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv14s0171g00320.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------actagtagtttc---actattttctcagtaaccttcctgtttgcactatttgtttatccttg--ttattgcccctctttttgaaaattacat--tctgtttgggcagGTTGTGTATAGTAATGTTTATATGCTTGATGATGGAACGACTTGGAAGGAACTTCCACCTATGCCAAAACCAGATTCACATATAGAATTTGCTTGGGTGA
                                 | |     ||||   | |   || |   || |  |  || |     ||||||  |  |   |   | |||  | |  ||||||| ||||  |  | ||||    ||||| || |||    ||||||||||||| ||||| |  | ||  ||||| |   | |||||||||||||| || ||||| |||||||| |||||||||||  
gtatatgatccacctattgtgctctagctggggatttcctttttctagattggcttgtagctacctgtgatgatcatgatatttgaatgccagagatctgttgtgcattattttgaacattaggtggtttgttc---cagGTAGTTTATGAGGATGTTTATATGCTGGATGACGAGATGAAGTGGAAAGTGTTGCCACCTATGCCAAAGCCCGATTCCCATATAGAGTTTGCTTGGGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76013568|gb|DT940738.1|DT940738
EST:     TCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAG                         GTTGTGTATAGTAATGTTTATATGCTTGATGATGGAACGACTTGGAAGGAA
genomic: TCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgat ... gtttgggcagGTTGTGTATAGTAATGTTTATATGCTTGATGATGGAACGACTTGGAAGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttatccttgttattgcccctctttttgaaaattacattctgtttgggcagGTTGTGTATAGTAATGTTTATATGCTTGATGATGGAACGACTTGGAAGGAACTTCCACCTATGCCAAAACCAGATTCACATATAGAATTTGCTTGGGTGA
                                         ttctgttt  CT-rich tract
                          tttttgaaaattacat  TA-rich tract