1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctgttacgttggattctatttgcaactttattttttttattcttgtcactttgctacaatgccctctctcaggactagtcatttttataatcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTGCGGACTTGCCAGCTCCAGAACTGAAATGGGAGGAGATGGCTGAAGCAC
species | Zea mays |
transcript | GRMZM2G030598_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|211021181|gb|FK989207.1|FK989207
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|211021185|gb|FK989211.1|FK989211
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|28873437|gb|CB329427.1|CB329427
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|211021183|gb|FK989209.1|FK989209
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|211021186|gb|FK989212.1|FK989212
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|149077978|gb|EE166712.2|EE166712
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|211021180|gb|FK989206.1|FK989206
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|15177410|gb|BI398349.1|BI398349
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|211021182|gb|FK989208.1|FK989208
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|148968151|gb|EE019438.2|EE019438
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|50330857|gb|CO525983.1|CO525983
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTEST: gi|148930190|gb|EC872589.2|EC872589
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
EST: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAG ATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
genomic: TTAATCTCCACACCGGACCCGCCGGTTCGACGCCGCCCGTCGCGAAGAAGgtgaagcctc ... tcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTT
tcactttgctacaatgccctctctcaggactagtcatttttataatcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTGCGGACTTGCCAGCTCCAGAACTGAAATGGGAGGAGATGGCTGAAGCAC
atttttataatcttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttacgttggattctatttgcaactttattttttttattcttgtcactttgctacaatgccctctctcaggactagtcatttttataatcttgtacagATTAAGGAGGACAAGAAATCTGTAGGTTCGACTGGCATAAATGCAACTTTTGCGGACTTGCCAGCTCCAGAACTGAAATGGGAGGAGATGGCTGAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC