Sequence
atgc intronic sequence ATGC exonic sequenceTGTAGTTGCAAATGATAAACTCCTTGTTATTGGTGGTCAAGAAGGTGATTTCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgatatgcaactcattatagctaattgatgcacattatgttgtccttatgttttaagatcaactgagatcaattccctacgttaaagacaactt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g41020.1 (Oryza sativa), 5'ss of exon 5
TGTAGTTGCAAATGATAAACTCCTTGTTATTGGTGGTCAAGAAGGTGATTTCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgatatgcaactca----ttata---gctaattgatgcacattatgttgtccttatgttttaagatcaactgagatcaattccctacgttaaagacaactt
||| ||||| |||||||| || |||||||||||||| |||||||| ||||| ||||| || ||||| || ||||||||||||||||||||||||||||||||||| |||| || | |||| |||| ||||||| |||| ||| | | | || |||||| || || | | | ||
TGTTGTTGCTAATGATAAGCTACTTGTTATTGGTGGCCAAGAAGGAGATTTTATGGCGAAACCTGGATCACCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgctgatctgtagctcaatcactatatatgctaatttctgcatattgtataggaatt-tgttttgtacattttgaagttcgacatggatcacttttga------
upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G06690.1 (Glycine max), 5'ss of exon 5
TGTAGTTGCAAATGATAAACTCCTTGTTATTGGTGGTCAAGAAGGTGATTTCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgatatgcaact-----cattatagctaattga-----tgcacattatgtt---gtccttatgttttaagatcaactgagatcaattccctacgttaaagacaactt----------------------------------------------------
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CATTGCAGTCAATGATCGACTTTTTGTTATTGGTGGACAAGAGGGTGATTTTATGGCCAAACCCGGTTCGCCTATATTCAAGTGTTCACGCAGGCATGAGgtataattttctctacttgtcaacatcatacatgacttacaaattacatataataatttggtagttaatttttcacgcctagtatgttgagagaccaacatatattggattctatatatgatcatttcaagggaacttgtggaactaaattttcttacgtttcag
upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G23660.1 (Glycine max), 5'ss of exon 4
TGTAGTTGCAAATGATAAACTCCTTGTTATTGGTGGTCAAGAAGGTGATTTCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgatatgcaactcattat-------agctaattgatgcacattatgttgtccttatgttttaagatcaactgagatcaattccctacgttaaagacaactt
||| || | ||||| || |||| |||||||||||||||| ||||| |||||||| |||||||| ||||| || || || | ||| |||||| | | || | |||| | || ||| || |||||| |||| || | | | ||| |||||||| || | ||||
TGTTGTGGTTGATGATCGTCTTTATGTTCTTGGTGGTCAAGAAGGAGATTTTATGGCCAAACCTGGGTCACCTATTTTCAAGTGCTCACGCAGACAAGAGgtaagccaaggataaaatagttatttttcttatcttatttgctcaaattatggacaacttaggtatccttct-acttgatatcaattctctgagccgaaga------
upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G24640.1 (Glycine max), 5'ss of exon 5
TGTAGTTGCAAATGATAAACTCCTTGTTATTGGTGGTCAAGAAGGTGATTTCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgatatgcaact-----cattatagc---taattga-----tgcacattatgttgtcc---ttatgttttaagatcaactgagatcaattccc----tacgttaaagacaactt------------------------------------------------
| | | |||||| ||| ||||||||||||| |||||||||||||| |||||||| ||||| || |||||||| || ||| | ||| ||| |||| | | | | | ||| ||| | ||| | |||| || || | | ||| |||| | | | | | | | || || || || | | |
CATTGCAGTCAATGATCGACTTTTTGTTATTGGTGGACAAGAAGGTGATTTTATGGCCAAACCTGGTTCGCCTATATTCAAGTGTTCACGCAGACATGAAgtataattttctccgcttgtcaacatcatactacatgatttacaaattgcatataataatatggcagttactttttcatgcctaatatgttgagagaccagcatatattgaattctatatatgatcttttcaagggaacttgtggaattaaattttcttacgtttcag
upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT1G51540.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTAGTTGCAAATGATAAACTCCTTGTTATTGGTGGTCAAGAAGGTGATTTCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgatatgcaactcattatagctaattgatgcac-attatgttgtccttatgttttaagatcaactgagatcaattccctacgttaaagacaactt
|||||| | |||| ||| |||| ||||||||||||||||||||||||||||| || ||||| ||||| || || ||||| | | | |||||| | ||| || | ||| |||| | | ||| |||| | | |||||| | | ||
TGTAGTAGTTGATGACCGACTATTTGTAATTGGTGGTCAAGAAGGTGATTTCATGGCTAAACCTGGATCTCCAATCTTCAAATGCTCACGCCGTATGGAGgtac-tggattaatgtcttagccaagcaaattaagctattattctgttaactaagttctttaagtttggttcag---------------------------
upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT3G27220.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTAGTTGCAAATGATAAACTCCTTGTTATTGGTGGTCAAGAAGGTGATTTCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgatatgcaactcattatagctaattgatgcacattatgttgtccttatgttttaagatcaactgagatcaattccctacgttaaagacaactt
||||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||||| ||| || || || || || || | ||| | ||||| | | | | | | || | | | | | | | || || ||| | || || |||
TGTAGTTGCTAACGATAAACTACTTGTAATCGGTGGCCAAGAAGGTGACTTCATGGCCAAACCTAACTCACCCATCTTCAAGTGCTCACGTAGACGCGAGgtttacc--ttcctctttagtcaaaactga--aaaaaaaaaaaaaacgcctctagtttctaatgt---ttggtcgcatttcag-----------------
upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv09s0054g00620.t01 (Vitis vinifera), 5'ss of exon 5
TGTAGTTGCAAATGATAAACTCCTTGTTATTGGTGGTCAAGAAGGTGATTTCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgat--atgcaactcattatagctaattgatgcacattatgttgtccttatgttttaagatcaactgagatcaattccctacgttaaagacaactt-
| | || | ||||| | |||||||||||||||||||| || ||||| ||||| || ||||| || ||||| ||||| || | || | ||||||| | |||| ||| | || | ||||| | | | ||| | |||| | || | | || | | |||| | |||
TATTGTGGTTGATGATCGGTTACTTGTTATTGGTGGTCAAGAGGGCGATTTTATGGCAAAACCTGGATCACCTATTTTTAAGTGCTCCCGTAGGAATGAGgtaagctgattaatgtgttttctt-caaataattt-tacttgattggttttgattatactgtatcaattattgcaaagagaatcctatatccttt-tgccttg
upper sequence: GRMZM2G030598_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0171g00320.t01 (Vitis vinifera), 5'ss of exon 5
TGTAGTTGCAAATGATAAACTCCTTGTTATTGGTGGTCAAGAAGGTGATTTCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgatatgcaact-cattatagctaa--------ttgatgcacattatgttgtccttatgttttaagatcaactgagatcaattcccta----cgttaaagacaactt------------------------
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TGTTGTGGTTGATGATCGGCTTTTTGTTATTGGTGGTCAAGAGGGTGATTTTATGGCTAAACCCGGTTCACCTATTTTCAAGTGCTCACGGAGGCATGAGgtatatgatccacctattgtgctctagctggggatttcctttttctagattggcttgtagctacctgtgatgatcatgatatttgaatgccagagatctgttgtgcattattttgaacattaggtggtttgttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76013568|gb|DT940738.1|DT940738EST: TCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAG GTTGTGTATAGTAATGTTTATATGCTTGATGATGGAACGACTTGGAAGGAA
genomic: TCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgat ... gtttgggcagGTTGTGTATAGTAATGTTTATATGCTTGATGATGGAACGACTTGGAAGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTAGTTGCAAATGATAAACTCCTTGTTATTGGTGGTCAAGAAGGTGATTTCATGGCCAAGCCTGGGTCTCCTATATTTAAATGTGTTAGAAGAAGTGAGgtatgttgatatgcaactcattatagctaattgatgcacattatgttgtccttatgttttaagatcaactgagatcaattccctacgttaaagacaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT